Locus 7767

Sequence ID 3R_DroMel_CAF1
Location 20,811,196 – 20,811,293
Length 97
Max. P 0.853797
window12529

overview

Window 9

Location 20,811,196 – 20,811,293
Length 97
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 90.70
Mean single sequence MFE -19.29
Consensus MFE -16.32
Energy contribution -16.36
Covariance contribution 0.04
Combinations/Pair 1.06
Mean z-score -1.57
Structure conservation index 0.85
SVM decision value 0.80
SVM RNA-class probability 0.853797
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20811196 97 + 27905053
GCCAGCGUCGCUGCCACCGCAGCUCAUACCUUUGAUUUAAAAUACAAAAAA---AAAAAGAGGGAAAAAAACCGCCGCGCUACGUAGGCUAUAUAAAUAA
((((((((.(((((....))))).....(((((..................---....))))).............))))).....)))........... ( -20.05)
>DroSec_CAF1 26841 95 + 1
GCCGGCGUCGCUGCUACCACAGCUCAUACCUUUGAUUUAAAAUACAAAAAA---AAAA--GGGGAAAAAAACCGCCGCGCUACGUAGGCUAUAUAAAUAA
(((((((..((((......))))((...(((((..................---.)))--)).)).......))))(((...))).)))........... ( -20.81)
>DroSim_CAF1 26802 94 + 1
GCCGGCGUCGCUGCUACCACAGCUCAUACCUUUGAUUUAAAAUACAAAAA----AAAA--GGGGAAAAAAACCGCCGCGCUACGUAGGCUAUAUAAAUAA
(((((((..((((......))))((...(((((..(((........))).----.)))--)).)).......))))(((...))).)))........... ( -21.60)
>DroEre_CAF1 24571 93 + 1
GCCGGCGUCGCUGCCACCACAGCUCAUACCUUUGAUUUAAAAUAAAA-------AAAAAUGGGAAAAAAAACCGCCGCGCUACGUAGGCUAUAUAAAUAA
(((((((..((((......)))).....(((....(((........)-------))....))).........))))(((...))).)))........... ( -17.80)
>DroYak_CAF1 20062 100 + 1
GUCGGCGUCGCUGCCAGCACAGCUCAUACCUUUGAUUUAAAAUAAAAAGAAAAAAAAAGUGGAAAAAAAAACCGCCGCGCUACGUAGGCUAUAUAAAUAA
(.(((((..((((......))))(((......))).....................................))))))(((.....)))........... ( -16.20)
>consensus
GCCGGCGUCGCUGCCACCACAGCUCAUACCUUUGAUUUAAAAUACAAAAAA___AAAA__GGGGAAAAAAACCGCCGCGCUACGUAGGCUAUAUAAAUAA
(((.(((((((.((.........(((......)))..........................((........)))).)))..)))).)))........... (-16.32 = -16.36 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:13 2006