| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,807,188 – 20,807,290 |
| Length | 102 |
| Max. P | 0.683722 |
| Location | 20,807,188 – 20,807,290 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.86 |
| Mean single sequence MFE | -30.72 |
| Consensus MFE | -20.03 |
| Energy contribution | -19.58 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.683722 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20807188 102 + 27905053 CACGAGCUGCG-UUCUUGUCUGGGGCACAUUAAAGACACAUGAAUGGCCCGGCAAUAAAUAUUAUUAAAAAUGUUUGCCUUUAUGGCAUGCUAAAUGCGAUGC----------------- .......((((-((........((((.((((...........))))))))((((..(((((((......)))))))(((.....))).)))).))))))....----------------- ( -24.10) >DroVir_CAF1 5080 107 + 1 CACAGGCCGUGGCGCUUGUCUGGGGCACAUUAAAGGCGCAUGAAUGGCCUGGCAAUAAAUAUUACG-AAAAAAUUUGCCUUUAUGGCAUGCUAAACGUGCUCUAACAA------------ ...(((((((.((((((...((.....))....))))))....)))))))(((((...........-.......))))).(((.((((((.....)))))).)))...------------ ( -32.87) >DroPse_CAF1 17105 113 + 1 CACGAGCUGCG-UUCUUGUCUGGGGCACAUUAAAGACACAUGAAUGGCCUGGCAAUAAAUAUUAUUAAAAAUGUUUGCCUUUAUGGCAUGCUAAACGAGACACCA------GCAACCAGC .....((((.(-(((((((((.((((.((((...........)))))))(((((..(((((((......)))))))(((.....))).)))))..).)))))..)------).))))))) ( -31.30) >DroGri_CAF1 21414 118 + 1 CACGGGCUGUGGCGCUUGUCUGGGGCACAUUAAAGGCGCAUGAAUGGCCUGGCAAUAAAUAUUACAGAAAAUAUUUGCCUUUAUGGCAUGCUAAGCGUACUUUAACAAACAGCAACA-G- .....(((((.((((((...((.....))....)))))).......((.(((((..(((((((......)))))))(((.....))).))))).))............)))))....-.- ( -32.00) >DroMoj_CAF1 16158 107 + 1 CACGGGCUGUGGCGCUUGUCUGGGGCACAUUAAAGGCGCAUGAAUGGCCUGGCAAUAAAUAUUACA-AAAAAAUUUGCCUUUAUGGCAUGCUAAACGUGCUGUAACAA------------ ...(((((((.((((((...((.....))....))))))....)))))))(((((...........-.......))))).((((((((((.....))))))))))...------------ ( -32.77) >DroPer_CAF1 16436 113 + 1 CACGAGCUGCG-UUCUUGUCUGGGGCACAUUAAAGACACAUGAAUGGCCUGGCAAUAAAUAUUAUUAAAAAUGUUUGCCUUUAUGGCAUGCUAAACGAGACACCA------GCAACCAGC .....((((.(-(((((((((.((((.((((...........)))))))(((((..(((((((......)))))))(((.....))).)))))..).)))))..)------).))))))) ( -31.30) >consensus CACGAGCUGCG_CGCUUGUCUGGGGCACAUUAAAGACACAUGAAUGGCCUGGCAAUAAAUAUUACUAAAAAUAUUUGCCUUUAUGGCAUGCUAAACGUGAUACAA_______________ .(((((........)))))...((((.((((...........))))))))((((..(((((((......)))))))(((.....))).))))............................ (-20.03 = -19.58 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:09 2006