| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,805,347 – 20,805,444 |
| Length | 97 |
| Max. P | 0.647285 |
| Location | 20,805,347 – 20,805,444 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 85.20 |
| Mean single sequence MFE | -18.33 |
| Consensus MFE | -13.89 |
| Energy contribution | -14.52 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.647285 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20805347 97 + 27905053 -----------CUGUUUAUUCUAGCAAUUUCCGCAGUUUUCGCUGCGAUUGCCACACUUGUCAUCAUCCCUUCUCCAGGCUUCCAAUUUGGACCCCUCCCCAGGUCA--U -----------............(((((...((((((....)))))))))))................(((.....(((..(((.....)))..)))....)))...--. ( -19.50) >DroSec_CAF1 21006 97 + 1 -----------CUGUUUAUUCUAGCAAUUUCCGCAGUUUUCGCUGCGAUUGCCACACUUGUCAUCAUCCCUUCUCCAGGCUUCCAAUUUGGACCCCUUCCCAGGUCA--U -----------............(((((...((((((....)))))))))))................(((.....(((..(((.....)))..)))....)))...--. ( -19.50) >DroSim_CAF1 20931 97 + 1 -----------CUGUUUAUUCUAGCAAUUUCCGCAGUUUUCGCUGCGAUUGCCACACUUGUCAUCAUCCCUUCUCCAGGCUUCCAAUUUGGACCCCUCCCCAGGUCA--U -----------............(((((...((((((....)))))))))))................(((.....(((..(((.....)))..)))....)))...--. ( -19.50) >DroEre_CAF1 18575 97 + 1 -----------CUGUUUAUUCUAGCAAUUUCCGCAGUUUUCGCUGCGAUUGCUACACUUGUCAUCAUCCCUUCUCCAGGCUUCCAAUUUGGACCCCUCCCCAGGUCA--U -----------..........(((((((...((((((....)))))))))))))..............(((.....(((..(((.....)))..)))....)))...--. ( -22.00) >DroYak_CAF1 13814 97 + 1 -----------CUGUUUAUUCUAGCAAUUUCCGCAGUUUUCGCUGCGAUUGCUACACUUGUCAUCAUCCCUUCUCCAGGCCUCCAAUUUGGACCCCUCCCCAGGUCA--U -----------..........(((((((...((((((....)))))))))))))..............(((.....(((..(((.....)))..)))....)))...--. ( -22.00) >DroPer_CAF1 14324 98 + 1 UUUCCCUUCUUCUAUUUAUUCUAGCAAUUUCCGCAGUUUUAGUUCUGAUUGUUCUACUUGUCAAC---CC---UCCCGGUC-GCAAU-----CCCCAUCCCAAGCCAAAU .......................((.......((((((........)))))).....((((..((---(.---....))).-)))).-----...........))..... ( -7.50) >consensus ___________CUGUUUAUUCUAGCAAUUUCCGCAGUUUUCGCUGCGAUUGCCACACUUGUCAUCAUCCCUUCUCCAGGCUUCCAAUUUGGACCCCUCCCCAGGUCA__U .......................(((((...(((((......))))))))))................(((.....(((..(((.....)))..)))....)))...... (-13.89 = -14.52 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:08 2006