| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,804,911 – 20,805,004 |
| Length | 93 |
| Max. P | 0.828727 |
| Location | 20,804,911 – 20,805,004 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 79.45 |
| Mean single sequence MFE | -24.17 |
| Consensus MFE | -17.69 |
| Energy contribution | -17.92 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.828727 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20804911 93 - 27905053 UUUUUUUUGCUUUGUGGGUGGCUUUCAGGGUCAAGUUUGGGGACCCACGUCCCGCUGAAAGUGAUCCAAACUCUACAAAG---UUC-----GAAUUGAAAA ...(((..(((((((((((.((((((((...((....))(((((....))))).)))))))).)))).......))))))---)..-----)))....... ( -29.11) >DroSec_CAF1 20582 93 - 1 GCUUUUUUGUUUUGUGGGUGGCUUUCAGGGUCAAGUUUGGGGACCCACAUCCCGCUGAAAGUGAUCCGAACUCUACCAAA---UUC-----GAAUUGAAAA .....((((..((...(((((..(((.((((((..((((((((......)))).).)))..)))))))))..))))).))---..)-----)))....... ( -25.90) >DroSim_CAF1 20516 86 - 1 -------UGUUUUGUGGGUGGCUUUCAGGGUCAAGUUUGGGGACCCACGUCCCGCUGAAAGUGAUCCAAACUCCACCGAA---UUC-----GAAUUGAAAA -------.......(((((.((((((((...((....))(((((....))))).)))))))).)))))........((..---..)-----)......... ( -25.80) >DroEre_CAF1 18152 86 - 1 -------UUUUUUGUGGGUGGCUUUCAGGGUCAAGUUUGGGGACCCACGUCCCGCUGAAAGUGAUCGAAAAUCUAUAAAA---UUC-----GAGUUCAAAA -------..((((((((((.((((((((...((....))(((((....))))).))))))))........))))))))))---...-----.......... ( -22.00) >DroYak_CAF1 13384 82 - 1 UUG----UUUUUUGUGGGUGGCUUUCAGGGUCAAGUUUGGGGACCCA-------CUGAAAGUGAUCGAAAAUCUAUCAAA---UUC-----GAAUUGAAAA ...----.........(((.((((((((((((.........))))).-------.))))))).))).........((((.---...-----...))))... ( -19.20) >DroAna_CAF1 14798 94 - 1 -UG----ACUUUUGUGGGUGGCUUUCAGGGUCAAGUUUGGGGACC-AAAUGCCGUUGAAAGUGAUCUGAAAUAAAUAGAAAAAUUAAACAAAAAUCG-AAA -.(----(.((((((((((.(((((((((((...((((((...))-))))))).)))))))).))))......(((......)))..)))))).)).-... ( -23.00) >consensus _U_____UGUUUUGUGGGUGGCUUUCAGGGUCAAGUUUGGGGACCCACGUCCCGCUGAAAGUGAUCCAAAAUCUACAAAA___UUC_____GAAUUGAAAA ..............(((((.((((((((.(.......(((....))).....).)))))))).)))))................................. (-17.69 = -17.92 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:07 2006