Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 20,802,325 – 20,802,419 |
Length | 94 |
Max. P | 0.545500 |
Location | 20,802,325 – 20,802,419 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 81.68 |
Mean single sequence MFE | -20.14 |
Consensus MFE | -14.91 |
Energy contribution | -15.42 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.25 |
Mean z-score | -1.27 |
Structure conservation index | 0.74 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545500 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20802325 94 - 27905053 UUUUUGGCUUUUUCACGCUCACAGUCUGACGCGCCUCAAAAGCCAAACCAAAGGCUGAAGUGCACUUAGAGAAAA-UAUAUUAGCAUUUUACAUU--------- ..((((((((((...((((((.....))).)))....))))))))))........((((((((............-.......))))))))....--------- ( -20.51) >DroSec_CAF1 18027 92 - 1 UUUUUGGCUUUUUCACGCUCACAGUCUGACUCGCCUCAAAAGCCAAACCA--GGCUGAAGUGCACUUAGAGAAAA-UAUAUUAGCAUUUUACAUU--------- ..(((((((((((((.((.....)).)))........))))))))))...--...((((((((............-.......))))))))....--------- ( -16.41) >DroSim_CAF1 17978 92 - 1 UUUUUGGCUUUUUCACGCUCACAGUCUGACGCGCCUCAAAAGCCAAACCA--GGCUGAAGUGCACUUAGAGAAAA-UAUAUUUGCAUUUUACAUU--------- ..((((((((((...((((((.....))).)))....))))))))))...--...(((((((((..((.......-..))..)))))))))....--------- ( -22.90) >DroEre_CAF1 15653 101 - 1 UUUUUGGCUUUUUCACGCUCACAGUCUGACGCGCCUCAAAAGCCAAACAA--GGCUGAAAUGCACUAGGAGAAAA-UAGAUUGCUUUUUUACAUAAAUUUCAUU ..((((((((((...((((((.....))).)))....))))))))))...--...((((((.......((((((.-........))))))......)))))).. ( -19.62) >DroYak_CAF1 10821 101 - 1 UUUUUGGCUUUUUCACGCUCACAGUCUGACGCGCCUCAAAAGCCAAACAA--GGCUGCAAUGCACUACGAGAAAU-UAGAUUAGUAUUUUACAUAAAUACUAUU ..((((((((((...((((((.....))).)))....))))))))))..(--(((......)).)).........-.....((((((((.....)))))))).. ( -22.80) >DroAna_CAF1 12211 93 - 1 UUUUUGGCUUUUUCAUGUUCACAGUCUGACGCGCCUCAAAAGCCAACCAA--GGCGGAAUUACACUGAGAGAGGAGUAUAGG---UUUUCUUUUC------AUU ...(((((((((...((((((.....))).)))....)))))))))((..--...))...........((((((((......---..))))))))------... ( -18.60) >consensus UUUUUGGCUUUUUCACGCUCACAGUCUGACGCGCCUCAAAAGCCAAACAA__GGCUGAAGUGCACUUAGAGAAAA_UAUAUUAGCAUUUUACAUU_________ ..((((((((((...((((((.....))).)))....))))))))))........((((((((....................))))))))............. (-14.91 = -15.42 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:06 2006