Locus 7760

Sequence ID 3R_DroMel_CAF1
Location 20,802,070 – 20,802,190
Length 120
Max. P 0.983544
window12520

overview

Window 0

Location 20,802,070 – 20,802,190
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.17
Mean single sequence MFE -29.28
Consensus MFE -24.16
Energy contribution -23.32
Covariance contribution -0.84
Combinations/Pair 1.23
Mean z-score -2.17
Structure conservation index 0.83
SVM decision value 1.95
SVM RNA-class probability 0.983544
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20802070 120 - 27905053
AACAUUGGGCUUAUUCACCAAGCUCAUGAAUAUUAAUGUCUAGAUGGGUCUUAAAGCAUUUUUAUAGCCCAGUCAACAGACUAUUUCAGCUGUGCCAAGUAAAGUACUAAUGAACACUUA
..(((.((((((.......))))))))).........((((.(((((((..(((((...)))))..))))).))...))))...((((...((((........))))...))))...... ( -25.00)
>DroSec_CAF1 17772 120 - 1
AAGAUUGGGCUUAUUCACCAAGCUCAUGAAUAUUAAUGUCUGAAUGGGUCUUAAAGCAUUUUUAUAGCCCAGUCAACAGACUAUUUCAGUUGUGCCAAGUAAGGUACUAAUGAACACUUA
.....(((((((.......)))))))...........(((((..(((((..(((((...)))))..))))).....)))))...((((...(((((......)))))...))))...... ( -30.80)
>DroSim_CAF1 17723 120 - 1
AAGAUUGGGCUUAUUCACCAAGCUCAUGAAUAUUAAUGUCUGGAUGGGUCUUAAAGCAUUUUUAUAGCCCAGUCAACAGACUAUUUCAGUUGUGCCAAGUAAGGUACUAAUGAACACUUA
.....(((((((.......)))))))...........(((((..(((((..(((((...)))))..))))).....)))))...((((...(((((......)))))...))))...... ( -31.90)
>DroEre_CAF1 15357 118 - 1
AAGACUGAGCUUUUACACCAAGCUCAUGAAUAUUAAUGUCUAGAUGGGUCUUAAA-CAU-UUUAUUGCCCGGCUAACAGACUAUUUCAGCUGCGCCAGGUAAAGUACUAAUGAACACUUA
((((((((((((.......)))))).....((((........))))))))))...-(((-(...(((((.(((...(((.((.....))))).))).)))))......))))........ ( -24.60)
>DroYak_CAF1 10588 120 - 1
AAGAUUGAGCUUAUUCACCAGGCUCAUGAAUAUUAAUGUCUAGAUGGGUCUUAAAGCAUUUUUAUGGCCCAGCUAACAGACUAUUUCAGUUGAGCCAAGUAAAGUACUAAUGAGCACUUA
........(((((((.....((((((((((......(((.(((.((((((.(((((...))))).)))))).))))))......))))..)))))).((((...)))))))))))..... ( -34.10)
>consensus
AAGAUUGGGCUUAUUCACCAAGCUCAUGAAUAUUAAUGUCUAGAUGGGUCUUAAAGCAUUUUUAUAGCCCAGUCAACAGACUAUUUCAGUUGUGCCAAGUAAAGUACUAAUGAACACUUA
.....(((((((.......)))))))...........((((((.(((((..((((.....))))..))))).))...))))...((((...((((........))))...))))...... (-24.16 = -23.32 +  -0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:05 2006