Locus 7759

Sequence ID 3R_DroMel_CAF1
Location 20,801,505 – 20,801,599
Length 94
Max. P 0.500000
window12519

overview

Window 9

Location 20,801,505 – 20,801,599
Length 94
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 82.53
Mean single sequence MFE -28.68
Consensus MFE -18.01
Energy contribution -17.67
Covariance contribution -0.35
Combinations/Pair 1.15
Mean z-score -1.77
Structure conservation index 0.63
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20801505 94 - 27905053
--AUGCCCAU-GUUGAGCGGAGAACUUUAAUUGAAAUUUCGCCGGCAAUGGA--GCUGGCGACAAGUUGAUUUUCCACUUGGCCAGCAGCUAUUGGAGC
--..((((((-((((.((.(((......(((..(....((((((((......--))))))))....)..))).....))).))))))).....))).)) ( -31.60)
>DroPse_CAF1 11337 90 - 1
CCAUGACCAU-UUUGAGUGGAGAACUUUAAUUGAAAUUUCGCUGGU--------GAUGGCGACAAGUUGAUUUUCCACUUGGCCAGCAGCUACUGGAGC
..........-.(..(((((((((..((((((......(((((...--------...)))))..)))))))))))))))..)((((......))))... ( -24.90)
>DroEre_CAF1 14814 94 - 1
--AUGCCCAA-GUUGAGCGGAGAACUUUAAUUGAAAUUUCGCCGGCAAUGGA--GCUGGCGACAAGUUGAUUUUCCACUUGGCCAGCGGCUAUUGGAGC
--..((((..-((..((.((((((..((((((......((((((((......--))))))))..)))))))))))).))..))..).)))......... ( -33.90)
>DroYak_CAF1 10052 94 - 1
--AUGCCCAA-GUUGAGCGGAGAACUUUAAUUGAAAUUUCGCCGGCAAUGGA--GCUGGCGACAAGUUGAUUUUCCACUUGGCCAGCAGCUAUUGGAGC
--..((((((-((((.((.(((......(((..(....((((((((......--))))))))....)..))).....))).))...)))))..))).)) ( -31.70)
>DroAna_CAF1 11759 84 - 1
--AUGCCCAAAAAUGGGCGGAGAACUUUAAUUGAAAUUUCGCCAGCGUUGGAGAGAUGGCGACAAGUUGAUUUUCCACUC-------------UCGACC
--.((((((....))))))((((.....(((..(....((((((.(......)...))))))....)..)))......))-------------)).... ( -25.10)
>DroPer_CAF1 10748 90 - 1
CCAUGACCAU-UUUGAGUGGAGAACUUUAAUUGAAAUUUCGCUGGU--------GAUGGCGACAAGUUGAUUUUCCACUUGGCCAGCAGCUACUGGAGC
..........-.(..(((((((((..((((((......(((((...--------...)))))..)))))))))))))))..)((((......))))... ( -24.90)
>consensus
__AUGCCCAA_GUUGAGCGGAGAACUUUAAUUGAAAUUUCGCCGGCAAUGGA__GAUGGCGACAAGUUGAUUUUCCACUUGGCCAGCAGCUAUUGGAGC
......(((.....(((.((((((..((((((......((((((............))))))..)))))))))))).)))(((.....)))..)))... (-18.01 = -17.67 +  -0.35)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:04 2006