Locus 7758

Sequence ID 3R_DroMel_CAF1
Location 20,800,986 – 20,801,080
Length 94
Max. P 0.722867
window12518

overview

Window 8

Location 20,800,986 – 20,801,080
Length 94
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 79.08
Mean single sequence MFE -29.95
Consensus MFE -14.21
Energy contribution -15.52
Covariance contribution 1.31
Combinations/Pair 1.19
Mean z-score -2.31
Structure conservation index 0.47
SVM decision value 0.40
SVM RNA-class probability 0.722867
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20800986 94 + 27905053
UUUGCACUGCGGCAGCUACUUUGUUGC-UGUCGUUGGCUGGUCUGGUUU---------UGGAUGCGGCUCCAGUUACAACAAAAUCGGAAUCAGAAGCAGUCAA
.(((.(((((((((((.........))-)))).....((((((((((((---------((..((..((....))..)).))))))))).)))))..)))))))) ( -35.60)
>DroPse_CAF1 10797 76 + 1
UUUGCUUUUCUCUUGCCACUUUGUUGC-GGCUCUU----GUUCUUGUUA---------UAAAUA-----UCAGCCAGAGC---------AACAGAAGCAGUCAA
.((((((((.....(((.(......).-)))..((----(((((.(((.---------......-----..))).)))))---------)).)))))))).... ( -18.10)
>DroSec_CAF1 16737 94 + 1
UUUGCACUGCGGCAGCUACUUUGUUGC-UGUCGUUGGCUGGUCUGGUUU---------UGGAUGCGGUUCCAGUUACAACAAAAUCGGAAUCAGAAGCAGUCAA
.(((.(((((((((((.........))-)))).....((((((((((((---------((...((.......)).....))))))))).)))))..)))))))) ( -32.40)
>DroSim_CAF1 16667 94 + 1
UUUGCACUGCGGCAGCUACUUUGUUGC-UGUCGUUGGCUGGUCUGGUUU---------UGGAUGCGGUUCCAGUUACAACAAAAUCGGAAUCAGAAGCAGUCAA
.(((.(((((((((((.........))-)))).....((((((((((((---------((...((.......)).....))))))))).)))))..)))))))) ( -32.40)
>DroEre_CAF1 14323 94 + 1
UUUGCUGUGCGGCAGCUACUUUGUUGC-UGUCGU-UGCUGGUCUGGUUUU--------UAGAUGCGGUUCCAGUUACAACAAAAUCGGAAUCAGAAGCAGUCAA
...(((((((((((((.........))-))))))-..(((((((((((((--------.....((.......))......)))))))).)))))..)))))... ( -27.90)
>DroYak_CAF1 9530 103 + 1
UUUGCACUGCGGCAGCUACUUUGUUGCCUGUCGU-GGCUGGUCUGGUUUUUUUUUGUUUUGAAGUGGUUCCAGUUACAAGAAAAUCGGAAUCAGAAGCAGUCAA
.(((.(((((((((((......))))))......-..((((((((((((((..((((....((.((....)).))))))))))))))).)))))..)))))))) ( -33.30)
>consensus
UUUGCACUGCGGCAGCUACUUUGUUGC_UGUCGUUGGCUGGUCUGGUUU_________UGGAUGCGGUUCCAGUUACAACAAAAUCGGAAUCAGAAGCAGUCAA
.((((.(.((((((((.........)).)))))).).((((((((((((...........((......))...........))))))).)))))..)))).... (-14.21 = -15.52 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:03 2006