| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,800,694 – 20,800,800 |
| Length | 106 |
| Max. P | 0.985305 |
| Location | 20,800,694 – 20,800,800 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 82.00 |
| Mean single sequence MFE | -25.76 |
| Consensus MFE | -23.51 |
| Energy contribution | -23.18 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.91 |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.985305 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20800694 106 - 27905053 AGAUGGAAAGAUGCAAGAAGAGCGAUCUAUACCAGCUCAUUUCUGCAAAUCGCCACUCAAAUACUCUAUAUAGGUGAU-----------UUCCAAUUAGUAAUCCCUUUCUAUUUUU ((((((((((.((((..((((((...........)))).))..))))(((((((..................))))))-----------)...............)))))))))).. ( -25.77) >DroSec_CAF1 16436 116 - 1 AGAUGGAAAGAUGCAAGAAGAGCGAUCUGG-UAUGCUCAUUUCUGCAAGUCGCAUCUCAAAUACUCUAUAUAGGUGAUUACUCCUUGCUUUCCAACCAUGAAUCCCUUUCCAUUUGU ((((((((((..(((((.((.((((.((..-..(((........)))))))))........(((.((....)))))....)).))))).(((.......)))...)))))))))).. ( -26.10) >DroSim_CAF1 16369 116 - 1 AGAUGGAAAGAUGCAAAAAGAGCGAUCUGC-UAUGCUCAUUUCUGCAAGUCGCAUCUCAAAUACUCUAUACAGGUGAUUAAUCCUUGCUUUCCAACCAUACCUCCCUUUCCAUUUGU ((((((((((........(((((((..(((-.............)))..)))).))).............((((.((....))))))..................)))))))))).. ( -25.42) >consensus AGAUGGAAAGAUGCAAGAAGAGCGAUCUGC_UAUGCUCAUUUCUGCAAGUCGCAUCUCAAAUACUCUAUAUAGGUGAUUA_UCCUUGCUUUCCAACCAUAAAUCCCUUUCCAUUUGU ((((((((((.((((.(((((((...........)))).))).))))((((((....................))))))..........................)))))))))).. (-23.51 = -23.18 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:02 2006