Locus 7756

Sequence ID	3R_DroMel_CAF1
Location	20,800,561 – 20,800,654
Length	93
Max. P	0.915367

overview

Window 6

Location	20,800,561 – 20,800,654
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	75.18
Mean single sequence MFE	-21.68
Consensus MFE	-14.32
Energy contribution	-14.52
Covariance contribution	0.20
Combinations/Pair	1.12
Mean z-score	-1.79
Structure conservation index	0.66
SVM decision value	1.10
SVM RNA-class probability	0.915367
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20800561 93 + 27905053
CCGUCUGCAUUGAGUUGCCGGCAGCUCUUUUUCAUACCCUAACAAAAGGUAUAUCAGGUCAAUGAGAUAAUGAAACAUUUCAUUAAGCUUAAA
..(((((....((((((....))))))......(((((.........)))))..)))).)..((((.(((((((....)))))))..)))).. ( -19.00)
>DroSec_CAF1 16315 81 + 1
CCGUCUGCAUCGAGUUGCCGGCAGCACUUUUUCAUACCCUCACAAAGGGUAUAUAUGGUCAAUGAGAUGAUGAAACAUUU------------A
.(((((.(((.((((((....))))........(((((((.....)))))))......)).))))))))...........------------. ( -20.00)
>DroSim_CAF1 16248 81 + 1
CCGUCUGCAUCGAGUUGCCGGCAGCACUUUUUCAUACCCUAACAAAGGGUAUAUAUGGUCAAUGAGAUGAUGAAACAUUU------------A
.(((((.(((.((((((....))))........(((((((.....)))))))......)).))))))))...........------------. ( -20.30)
>DroEre_CAF1 13990 76 + 1
CCGUCUGCAUCGAGUUGCCGGCAGCGCUUUU-CAUACCCUUGCAAAGGGUGUAUAC---CUCAUGGAUAUAUACCCAGCA-------------
..(((.(((......))).))).((((....-.........))...((((((((((---(....)).))))))))).)).------------- ( -24.92)
>DroYak_CAF1 9156 77 + 1
CCGUCUGCAUCGAGUUGCCGGCAGCGCUUUUGCAUACCCUAACAAAGGGUAUCCAU---CUAGCGGAUGAUAACACGCUC-------------
.(((((((.....((((....))))((....))(((((((.....)))))))....---...)))))))...........------------- ( -24.20)
>consensus
CCGUCUGCAUCGAGUUGCCGGCAGCACUUUUUCAUACCCUAACAAAGGGUAUAUAUGGUCAAUGAGAUGAUGAAACAUUU____________A
.(((((.......((((....))))........(((((((.....)))))))............)))))........................ (-14.32 = -14.52 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:01 2006