Locus 7755

Sequence ID 3R_DroMel_CAF1
Location 20,799,783 – 20,799,886
Length 103
Max. P 0.533836
window12515

overview

Window 5

Location 20,799,783 – 20,799,886
Length 103
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 85.08
Mean single sequence MFE -25.13
Consensus MFE -19.46
Energy contribution -19.20
Covariance contribution -0.26
Combinations/Pair 1.21
Mean z-score -1.79
Structure conservation index 0.77
SVM decision value 0.00
SVM RNA-class probability 0.533836
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20799783 103 + 27905053
UUGUCGUUAAUUUGCAUCUAUUAGGGGUUCGAUUGGAUUGGAUUAAUCAGCGCUUAAAUCUUUUUGUGCUGAUGACACUAUAAGUGGAUGUGA--------------AAUUUGAAUU
...(((....((..((((((((...((((((((...)))))))).((((((((............)))))))).........))))))))..)--------------)...)))... ( -26.00)
>DroSec_CAF1 15544 103 + 1
UUGUCGUUAAUUUGCAUCUAUUAGGGAUUCGAUUGGAUUGGAUUAAUCAGCGCUUAAAUCUUUUUGUGCUGAUGACACUAUAAGUGGAUGUGA--------------AAUCUGAAUU
..........((..((((((((...((((((((...)))))))).((((((((............)))))))).........))))))))..)--------------)......... ( -26.20)
>DroSim_CAF1 15477 103 + 1
UUGUCGUUAAUUUGCAUCUAUUAGGGAUUCGAUUGGAUUGGAUUAAUCAGCGCUUAAAUCUUUUUGUGCUGAUGACACUAUAAGUGGAUGUGA--------------AAUCUGAAUU
..........((..((((((((...((((((((...)))))))).((((((((............)))))))).........))))))))..)--------------)......... ( -26.20)
>DroEre_CAF1 13244 103 + 1
UUGUCGUUAAUUUGCAUCUAUUAGGGAUUUGAUUGGAUUGGAUUAAUCAGCGCUUAAAUCUUUUUGUGCUGAUGACACUAUAAGUGGAUGUGA--------------AAUCUGAAUU
..........((..((((((((...((((..((...))..)))).((((((((............)))))))).........))))))))..)--------------)......... ( -24.90)
>DroYak_CAF1 8287 103 + 1
GUGUCGUUAAUUUGCAUCUAUUAGGGAUUGGAUUCGAUUGGAUUAAUCAGCGCUUAAAUCUUUUUGUGCUGAUGACACUAUAAGUGGAUGUGA--------------AAUCUGCAUU
((((((((...(((.(((((........))))).)))...)))..((((((((............))))))))))))).....(..(((....--------------.)))..)... ( -28.30)
>DroPer_CAF1 8673 105 + 1
UUGUCGCUAAUUUGCAUCUAUUAGAGA----------UUGGAUUAAUCAACGCCUGAACUCAUCUGUGCUGAU--CAAUAUAAGUGGAUACAAGCCGCACCUAAGGCGAUCAGAAUU
((((((((.......((((.....)))----------).(((((.((((.(((..((.....)).))).))))--.)))....((((.......)))).))...))))).))).... ( -19.20)
>consensus
UUGUCGUUAAUUUGCAUCUAUUAGGGAUUCGAUUGGAUUGGAUUAAUCAGCGCUUAAAUCUUUUUGUGCUGAUGACACUAUAAGUGGAUGUGA______________AAUCUGAAUU
...........(((((((((((...(((((....)))))......((((((((............)))))))).........)))))))))))........................ (-19.46 = -19.20 +  -0.26)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:00 2006