| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,792,279 – 20,792,388 |
| Length | 109 |
| Max. P | 0.621872 |
| Location | 20,792,279 – 20,792,388 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 77.01 |
| Mean single sequence MFE | -25.27 |
| Consensus MFE | -10.78 |
| Energy contribution | -10.74 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.621872 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20792279 109 + 27905053 UACUCUUACAGAUGGCAAUGGAAACUAUGGCGUUCCUGAGAGUUUCCAUAUGGAGAUAUGCACGAAAAU-GGUUAGC---UCUACUAUUAAAUAAGUGUCUUUUUAAAUUAAU .(((((((..((((.((..(....)..)).))))..))))))).....((..(((((((.......(((-(((....---...))))))......)))))))..))....... ( -24.22) >DroSec_CAF1 8057 108 + 1 UACGCUUACAAAUGGCAAUGGAAACUAUGGCAUUCCCGAGAGUUUCCAUAUGGAGAUAUGCGAGAAAAU-GCUUAGC---UAUACCAU-AAAAAAGUGUCUUUUUAAAUUAAU .((((((....((((..((((...(((.(((((((.((...((((((....))))))...)).))..))-)))))))---))).))))-....)))))).............. ( -23.00) >DroSim_CAF1 7989 109 + 1 UACGCUUACAAAUGGCAAUGGAAACUAUGGCAUUCCCGAGAGUUUCCAUAUGGAGAUAUGCGAGAAAAU-GGUUAGC---UAUACCAUUAAAAAAAUGUCUUUUUAAAUUAAU ...(((.......))).(((((((((.(((.....)))..)))))))))..((((((((.......(((-(((....---...))))))......)))))))).......... ( -25.12) >DroEre_CAF1 4363 107 + 1 UACGCUUACAAGUGGGCAUGGAAACUAUGGCGUCUAU-GGAGUUUCCAUACGGAGAUACGGGAGAAAAU-GGUUAGU---UAUACCAUUAAAUGCGUAUGUAUUU-CUCUAAU ...(((((....)))))(((((((((((((...))))-..)))))))))..(((((((((...(..(((-(((....---...)))))).....)...)))))))-))..... ( -28.10) >DroYak_CAF1 434 100 + 1 UACGCUUACAACUGGCCAUGGAAACUAUGGUGUUGCUAAGAGUUUCCAUA--------UGGGAGAAAAUUAGUUAGUACUUGUAUUUUCUAAU----AUCUCUCU-AUUUAAU .((.((((((((..((((((....).))))))))).)))).)).......--------.((((((..(((((..((((....))))..)))))----.)))))).-....... ( -25.90) >consensus UACGCUUACAAAUGGCAAUGGAAACUAUGGCGUUCCUGAGAGUUUCCAUAUGGAGAUAUGCGAGAAAAU_GGUUAGC___UAUACCAUUAAAUAAGUGUCUUUUUAAAUUAAU .................(((((((((..((.....))...)))))))))................................................................ (-10.78 = -10.74 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:55 2006