| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,788,075 – 20,788,190 |
| Length | 115 |
| Max. P | 0.630578 |
| Location | 20,788,075 – 20,788,190 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.60 |
| Mean single sequence MFE | -30.40 |
| Consensus MFE | -24.75 |
| Energy contribution | -25.12 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.630578 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20788075 115 - 27905053 ACCCAAACAAAAAAUUGGCAGCAGC---AGGAGCAGAAGUCCGAGCGGCGUCAUCAUCCAUAUAAUUUGAUGACAUUUUUAAGGCAU--UGCUUUAACGUUUAACGUUUGUUGUUUGCUG ..((((........))))...((((---(((((((((.((..(((((..(((((((...........)))))))....(((((((..--.)))))))))))).)).)))))).))))))) ( -31.70) >DroSec_CAF1 3888 114 - 1 ACCCAAACAAAAAAUUGGCAGCAGC---AGCAGCAGAAGUCCGAGCGGCGUCAUCAUCCAUAUAAUUUGAUGAUAUUUUUAAGGCAU--UGCUUUA-GGUUUAACGUUUGUUGUUUGCUG ..((((........))))...((((---(((((((((.((..((((...(((((((...........)))))))....(((((((..--.))))))-))))).)).))))))).)))))) ( -29.70) >DroSim_CAF1 3840 117 - 1 ACCCAAACAAAAAAUUGGCAGCAGCAGCAGCAGCAGAAGUCCGAGCGGCGUCAUCAUCCAUAUAAUUUGAUGACAUUUUUAAGGCAU--UGCUUUA-GGUUUAACGUUUGUUGUUUGCUG ..((((........))))......(((((((((((((.((..((((...(((((((...........)))))))....(((((((..--.))))))-))))).)).))))))).)))))) ( -32.00) >DroEre_CAF1 516 113 - 1 ACCCAAACCGAAAAUUGGCAGCAAC------AGCAGAAGUCCGAGCAGCGUCAUCAUCCAUAUAAUUUGAUGACAUUUUUAAGGCAUCUUACUUUU-GGUUUAAGGCUUGUUGUUUGCUG ..((((........))))......(------((((((....(((((...(((((((...........)))))))...((((((.((.........)-).)))))))))))...))))))) ( -28.20) >consensus ACCCAAACAAAAAAUUGGCAGCAGC___AGCAGCAGAAGUCCGAGCGGCGUCAUCAUCCAUAUAAUUUGAUGACAUUUUUAAGGCAU__UGCUUUA_GGUUUAACGUUUGUUGUUUGCUG ..((((........)))).............((((((....((((((..(((((((...........))))))).....((((((.....))))))........))))))...)))))). (-24.75 = -25.12 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:43 2006