Locus 7747

Sequence ID 3R_DroMel_CAF1
Location 20,787,617 – 20,787,731
Length 114
Max. P 0.611817
window12495

overview

Window 5

Location 20,787,617 – 20,787,731
Length 114
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 95.97
Mean single sequence MFE -33.62
Consensus MFE -31.31
Energy contribution -33.12
Covariance contribution 1.81
Combinations/Pair 1.03
Mean z-score -1.53
Structure conservation index 0.93
SVM decision value 0.16
SVM RNA-class probability 0.611817
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20787617 114 + 27905053
GAUCCACAUCAACA------UCCACAUCCGCUGACCUAUGGGUACACCAAUGGGUACAAUUUACUGAUAAUCGCAAGCGGACGGGCGGGCUAACGACCUGCAAAAAAGUUUGGGAACUUC
..(((.((..(((.------.((...((((((.((((((.((....)).)))))).((......)).........)))))).))((((((....).)))))......))))))))..... ( -32.20)
>DroSec_CAF1 3409 120 + 1
GAUCCACAUCUACAUCCACAUCCACAUCCGCGGACCCAUGGGUACACCAAUGGGUACAAUUUACUGAUAAUCGCAAGCGGACGGGCGGGCUAACGACCUGCAAAAAAGUUUGGGAACUUC
..............(((.((..(.(.(((((..((((((.((....)).)))))).((......))..........))))).).((((((....).)))))......)..)))))..... ( -34.10)
>DroSim_CAF1 3372 120 + 1
GAUCCACAUCUACAUCCACAUCCACAUCCGCGGACCCAUGGGUACACCAAUGGGUACAAUUUACUGAUAAUCGCAAGCGGACGGGCGGGCUAACGACCUGCAAAAAAGUUUGGGAACUUC
..............(((.((..(.(.(((((..((((((.((....)).)))))).((......))..........))))).).((((((....).)))))......)..)))))..... ( -34.10)
>DroEre_CAF1 51 120 + 1
GAUCCACAUCUACAUCCACAUCCACAUCCGCAGACCCAUGGGUACACCAAUGGGUACAAUUUACUGAUAAUCGCAAGCGGACGGGCGGGCUAACGACCUGCAAAAAAGUUUGGGAACUUC
..............(((.((..(.(.(((((..((((((.((....)).)))))).((......))..........))))).).((((((....).)))))......)..)))))..... ( -34.10)
>consensus
GAUCCACAUCUACAUCCACAUCCACAUCCGCGGACCCAUGGGUACACCAAUGGGUACAAUUUACUGAUAAUCGCAAGCGGACGGGCGGGCUAACGACCUGCAAAAAAGUUUGGGAACUUC
..(((.((...((........((...(((((..((((((.((....)).)))))).((......))..........))))).))((((((....).)))))......)).)))))..... (-31.31 = -33.12 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:42 2006