Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 20,784,657 – 20,784,932 |
Length | 275 |
Max. P | 0.984664 |
Location | 20,784,657 – 20,784,772 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -24.71 |
Consensus MFE | -24.60 |
Energy contribution | -24.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.49 |
Structure conservation index | 1.00 |
SVM decision value | 1.98 |
SVM RNA-class probability | 0.984664 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20784657 115 + 27905053 GCAUUUGAAAAUAUAUAAAAGAUCACAAAUAAUAAACAAAAU-----CAAAUCAAAUGGAAUCCAUGCCCAUGCCCAACGGCGGCACUCGCAUUUUUGCGCCUGUCAAGGCCAAUUGCAU (((.(((...................................-----........((((...))))(((...(((....)))((((..((((....))))..))))..)))))).))).. ( -24.60) >DroSec_CAF1 436 120 + 1 GCAUUUGAAAAUAUAUAAAAGAUCACAAAUAAUAUAAAAAAUCAAAUCAAAUCAAAUGGAGUCCAUGCCCAUGCCCAACGGCGGCACUCGCAUUUUUGCGCCUGUCAAGGCCAAUUGCAU .(((((((...........................................)))))))((((....(((...(((....))))))))))(((...(((.((((....))))))).))).. ( -24.93) >DroSim_CAF1 438 120 + 1 GCAUUUGAAAAUACAUAAAAGAUCACAAAUAAUAUAAAAAAUCAAAUCAAAUCAAAUGGAAUCCAUGCCCAUGCCCAACGGCGGCACUCGCAUUUUUGCGCCUGUCAAGGCCAAUUGCAU (((.(((................................................((((...))))(((...(((....)))((((..((((....))))..))))..)))))).))).. ( -24.60) >consensus GCAUUUGAAAAUAUAUAAAAGAUCACAAAUAAUAUAAAAAAUCAAAUCAAAUCAAAUGGAAUCCAUGCCCAUGCCCAACGGCGGCACUCGCAUUUUUGCGCCUGUCAAGGCCAAUUGCAU (((.(((................................................((((...))))(((...(((....)))((((..((((....))))..))))..)))))).))).. (-24.60 = -24.60 + -0.00)
Location | 20,784,772 – 20,784,892 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -34.40 |
Consensus MFE | -32.88 |
Energy contribution | -32.66 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.87 |
Structure conservation index | 0.96 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782064 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20784772 120 - 27905053 AAGCUCGAGCGUGAGCAAAUUGACAAAACGGGCCACAAUGCAUUUGGGCAUUUCGGUCAGUUUUGAAUGAAAAAUCGGAGCGCGGCUUCCAGGUAAACUAACGCGAUUAUUAUGAAAUUA ..((((..((....)).......((((((.((((..(((((......)))))..)))).))))))............))))(((.................)))................ ( -31.53) >DroSec_CAF1 556 119 - 1 AAGCUCGAGCGUGAGCGAAUUGACAAAACGGGCCACAAUGCAUUUGGGCAUUU-GGCCAGUUUUGAAUGAAAAAUCGGAGCGCGGCUUCCAGGUAAACUAACGCGAUUAUUAUGAAAUUA ..((((..((....)).......((((((.(((((.(((((......))))))-)))).))))))............))))(((.................)))................ ( -35.83) >DroSim_CAF1 558 119 - 1 AAGCUCGAGCGUGAGCGAAUUGACAAAACGGGCCACAAUGCAUUUGGGCAUUU-GGCCAGUUUUGAAUGAAAAAUCGGAGCGCGGCUUCCAGGUAAACUAACGCGAUUAUUAUGAAAUUA ..((((..((....)).......((((((.(((((.(((((......))))))-)))).))))))............))))(((.................)))................ ( -35.83) >consensus AAGCUCGAGCGUGAGCGAAUUGACAAAACGGGCCACAAUGCAUUUGGGCAUUU_GGCCAGUUUUGAAUGAAAAAUCGGAGCGCGGCUUCCAGGUAAACUAACGCGAUUAUUAUGAAAUUA ..((((..((....)).......((((((.((((..(((((......)))))..)))).))))))............))))(((.................)))................ (-32.88 = -32.66 + -0.22)
Location | 20,784,812 – 20,784,932 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.21 |
Mean single sequence MFE | -34.10 |
Consensus MFE | -29.27 |
Energy contribution | -29.60 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.74 |
Structure conservation index | 0.86 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844425 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20784812 120 + 27905053 CUCCGAUUUUUCAUUCAAAACUGACCGAAAUGCCCAAAUGCAUUGUGGCCCGUUUUGUCAAUUUGCUCACGCUCGAGCUUUAGAAUCGACAGUCCGAAAAUAGUUUCGAUUUUGAGCCAC .........((((.((.((((((.(((.(((((......))))).)))..((..(((((.((((((((......))))....)))).)))))..))....)))))).))...)))).... ( -27.20) >DroSec_CAF1 596 119 + 1 CUCCGAUUUUUCAUUCAAAACUGGCC-AAAUGCCCAAAUGCAUUGUGGCCCGUUUUGUCAAUUCGCUCACGCUCGAGCUUUAGAAUCGACGGUUCGAAAAUAGUUUCGAUUUUGAGCCAC ...(((((((.....((((((.((((-((((((......))))).))))).)))))).......((((......))))...)))))))..(((((((((..........))))))))).. ( -39.30) >DroSim_CAF1 598 119 + 1 CUCCGAUUUUUCAUUCAAAACUGGCC-AAAUGCCCAAAUGCAUUGUGGCCCGUUUUGUCAAUUCGCUCACGCUCGAGCUUUAGAAUCGACGGUCCGAAAAUAGUUUCGAUUUUGAGCCAC ...(((((((.....((((((.((((-((((((......))))).))))).)))))).......((((......))))...)))))))..((..(((((..........)))))..)).. ( -35.80) >consensus CUCCGAUUUUUCAUUCAAAACUGGCC_AAAUGCCCAAAUGCAUUGUGGCCCGUUUUGUCAAUUCGCUCACGCUCGAGCUUUAGAAUCGACGGUCCGAAAAUAGUUUCGAUUUUGAGCCAC ((((((((((.....((((((.((((..(((((......)))))..)))).)))))).......((((......))))...)))))))......(((((....))))).....))).... (-29.27 = -29.60 + 0.33)
Location | 20,784,812 – 20,784,932 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.21 |
Mean single sequence MFE | -37.17 |
Consensus MFE | -36.57 |
Energy contribution | -36.47 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -2.41 |
Structure conservation index | 0.98 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.968055 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20784812 120 - 27905053 GUGGCUCAAAAUCGAAACUAUUUUCGGACUGUCGAUUCUAAAGCUCGAGCGUGAGCAAAUUGACAAAACGGGCCACAAUGCAUUUGGGCAUUUCGGUCAGUUUUGAAUGAAAAAUCGGAG (((((((....((((((....))))))..((((((((.....(((((....))))).))))))))....))))))).((((......))))((((((...((((....)))).)))))). ( -34.40) >DroSec_CAF1 596 119 - 1 GUGGCUCAAAAUCGAAACUAUUUUCGAACCGUCGAUUCUAAAGCUCGAGCGUGAGCGAAUUGACAAAACGGGCCACAAUGCAUUUGGGCAUUU-GGCCAGUUUUGAAUGAAAAAUCGGAG (((((((....((((((....))))))...((((((((....(((((....))))))))))))).....)))))))(((((......))))).-..((.(((((......))))).)).. ( -39.00) >DroSim_CAF1 598 119 - 1 GUGGCUCAAAAUCGAAACUAUUUUCGGACCGUCGAUUCUAAAGCUCGAGCGUGAGCGAAUUGACAAAACGGGCCACAAUGCAUUUGGGCAUUU-GGCCAGUUUUGAAUGAAAAAUCGGAG (((((((....((((((....))))))...((((((((....(((((....))))))))))))).....)))))))(((((......))))).-..((.(((((......))))).)).. ( -38.10) >consensus GUGGCUCAAAAUCGAAACUAUUUUCGGACCGUCGAUUCUAAAGCUCGAGCGUGAGCGAAUUGACAAAACGGGCCACAAUGCAUUUGGGCAUUU_GGCCAGUUUUGAAUGAAAAAUCGGAG (((((((....((((((....))))))...((((((((....(((((....))))))))))))).....)))))))(((((......)))))....((.(((((......))))).)).. (-36.57 = -36.47 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:32 2006