Locus 7741

Sequence ID 3R_DroMel_CAF1
Location 20,784,037 – 20,784,135
Length 98
Max. P 0.837829
window12478

overview

Window 8

Location 20,784,037 – 20,784,135
Length 98
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 87.10
Mean single sequence MFE -16.41
Consensus MFE -13.87
Energy contribution -14.20
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.11
Structure conservation index 0.85
SVM decision value 0.74
SVM RNA-class probability 0.837829
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20784037 98 - 27905053
AACCAACGAAAAUAAGUUGGAAAUGAAAACUGGUUUGGUUUAAGCCAAGUUAGAACACUAAAUCAGCCAGCAAAGAAUC--AA----AAACAAAAGGCCUUACU
..(((((........))))).........((..((((((....))))))..))............(((...........--..----........)))...... ( -17.90)
>DroPse_CAF1 26777 104 - 1
AACAAACGAAAAUAAGUUAGAAAUGAAAACUGGUUUGGUUUUAGCCAAGUUAGAACCUUAAAUCAGCCUGAAAACAAAACCCAAGCAAAACAAAAGACAAAACU
................(((....)))...((((((((((((((((...)))))))))..)))))))...................................... ( -13.80)
>DroSim_CAF1 27146 98 - 1
AACCAACGAAAAUAAGUUGGAAAUGAAAACUGGUUUGGUUUAAGCCAAGUUAGAACACUAAGUCAGCCAGCAAAGAAUC--AA----AAACAAAAGGCCUUACU
..(((((........))))).........((..((((((....))))))..)).....((((...(((...........--..----........))))))).. ( -18.10)
>DroEre_CAF1 28024 99 - 1
AACCAACGAAAAUAAGUUGGAAAUGAAAACUGGUUUGGUUUAAGCCAAGUUAGAACACUAAAUCAGCCAAAAAAGAACA--AA---AAAACAAAAGGCCUAACU
..(((((........))))).........((..((((((....))))))..))............(((...........--..---.........)))...... ( -17.85)
>DroYak_CAF1 26123 98 - 1
AACCAACGAAAAUAAGUUGGAAAUGAAAACUGGUUUGGUUUAAGCCAAGUUAGAACACUAAAUCAGCCGGCAAAGAAUA--AA----AAACAAAAGGCCCCACU
..(((((........))))).........((..((((((....))))))..))............(((...........--..----........)))...... ( -18.60)
>DroPer_CAF1 26040 104 - 1
AACAAACGAAAAUAAGUUAGAAAUGAAAACUGGUUUGGUUUUAGCCAAGUUAGAACCUUAAAUCCGCCUGAAAACAAAACCCAAGCAAAACAAAAGACAAAACU
................(((....)))...((.(((((((((((((...)))))))))........((.((...........)).)).))))...))........ ( -12.20)
>consensus
AACCAACGAAAAUAAGUUGGAAAUGAAAACUGGUUUGGUUUAAGCCAAGUUAGAACACUAAAUCAGCCAGAAAAGAAUA__AA____AAACAAAAGGCCUAACU
..(((((........))))).........((..((((((....))))))..))................................................... (-13.87 = -14.20 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:20 2006