Locus 7740

Sequence ID 3R_DroMel_CAF1
Location 20,781,978 – 20,782,075
Length 97
Max. P 0.968994
window12477

overview

Window 7

Location 20,781,978 – 20,782,075
Length 97
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 90.25
Mean single sequence MFE -28.38
Consensus MFE -25.92
Energy contribution -25.93
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.09
Structure conservation index 0.91
SVM decision value 1.63
SVM RNA-class probability 0.968994
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20781978 97 - 27905053
GCCACACGGGGAAUUUUACAAAGCCAUUCUCACAUAGCUAUUC-------GCUAUU-------UGCCAUUUGCUACUUGGCAGUUGGCAUUCGGCUAUUGGCACACAAAUG
((((.....(........)..((((........(((((.....-------))))).-------(((((.(((((....))))).)))))...))))..))))......... ( -27.50)
>DroSim_CAF1 25080 97 - 1
GCCACACGGGGAAUUUUACAAAGCCAUUCUCACAUAGCUAUUC-------GCUAUU-------UGCCAUUUGCUACUUGGCAGUUGGCAUUCGGCUAUUGGCACACAAAUG
((((.....(........)..((((........(((((.....-------))))).-------(((((.(((((....))))).)))))...))))..))))......... ( -27.50)
>DroEre_CAF1 25844 109 - 1
GCCACACGGGGAAUUUUACAAAGCCAUU--CACAUAGCUAUUCGCUAUUCGCUAUUUGCUAUUUGCCAUUUGCUACUUGGCAGUUGGCAUUCGGCUAUUGGCACACAAAUG
((((.....(........)..((((...--...(((((.....((.....)).....))))).(((((.(((((....))))).)))))...))))..))))......... ( -29.10)
>DroYak_CAF1 23955 102 - 1
GCCACACGGGGAAUUUUACAAAGCCAUU--CACAUAGCUAUUC-------GCUAUUUGCCAUAUGCCAUUUGCUACUUGGCAGUUGGCACUCGGCUAUUGGCACACAAAUG
((((.....(........)..((((...--...(((((.....-------))))).(((((..(((((.........)))))..)))))...))))..))))......... ( -29.40)
>consensus
GCCACACGGGGAAUUUUACAAAGCCAUU__CACAUAGCUAUUC_______GCUAUU_______UGCCAUUUGCUACUUGGCAGUUGGCAUUCGGCUAUUGGCACACAAAUG
((((.....(........)..((((........(((((............)))))........(((((.(((((....))))).)))))...))))..))))......... (-25.92 = -25.93 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:19 2006