Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,680,018 – 2,680,159 |
Length | 141 |
Max. P | 0.984981 |
Location | 2,680,018 – 2,680,120 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 84.37 |
Mean single sequence MFE | -24.29 |
Consensus MFE | -15.82 |
Energy contribution | -16.10 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.15 |
Mean z-score | -3.26 |
Structure conservation index | 0.65 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980951 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2680018 102 + 27905053 GAACAUAAUAUUUUUUUUUAGAGAAUAUCUUAACUAUGUUGCGAAGUAUUCCGACAUUACAUUGCAUUUGCAACAUUUACUGCAAUGUAUCUGAAACAGUGU ...............(((((((.............((((((.((.....))))))))(((((((((..............))))))))))))))))...... ( -18.24) >DroSec_CAF1 39563 100 + 1 GAACACAAUAUUUU--UUUAAAGAAUAUCUUAACCAUGUUGCGAAGUAUUGCAACAUUACAUUGCAUUUGCAACAUUGCCUGCAAUGUAUCUGAAACAGUGU ..((((.(((((((--.....))))))).......(((((((((....)))))))))(((((((((...(((....))).))))))))).........)))) ( -25.50) >DroSim_CAF1 32723 100 + 1 GAACACAAUAUUUU--UUUAAAGAAUAUCUUAACAAUGUUGCGAAGUAUUGCAACAUUACAUUGCAUUUGCAACAUUGCCUGCAAUGUAUCUGAAACAGUGU ..((((.(((((((--.....)))))))......((((((((((....))))))))))((((((((...(((....))).))))))))..........)))) ( -25.80) >DroEre_CAF1 33440 95 + 1 AUACACAUUU-------UUUAAGAAUAUAUUAAAAAUGUUGCAAAGCAUUGCAACUGUACAUUGCAUUUGCAACAUGUGCUGCAAUGUAUCUGAAACAGUGU ..((((..((-------(((((.......)))))))((((.((..((((((((...(((((((((....)))..))))))))))))))...)).)))))))) ( -25.20) >DroYak_CAF1 40025 100 + 1 GUACACAAUUUCUU-UCUUAAACAAUAUAUUAACAAUGUUGCAAAGUGUUGCAAGUGUAAAUUGCAUUUGCAACAUUU-AUGCAAUGUAUCUGAAACAAUGU ..............-....................(((((((((((((((((((((((.....)))))))))))))))-.)))))))).............. ( -26.70) >consensus GAACACAAUAUUUU__UUUAAAGAAUAUCUUAACAAUGUUGCGAAGUAUUGCAACAUUACAUUGCAUUUGCAACAUUUCCUGCAAUGUAUCUGAAACAGUGU ..((((...............................(((((((....)))))))..(((((((((..............))))))))).........)))) (-15.82 = -16.10 + 0.28)
Location | 2,680,018 – 2,680,120 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 84.37 |
Mean single sequence MFE | -23.10 |
Consensus MFE | -13.64 |
Energy contribution | -14.52 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.06 |
Mean z-score | -2.78 |
Structure conservation index | 0.59 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.869476 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2680018 102 - 27905053 ACACUGUUUCAGAUACAUUGCAGUAAAUGUUGCAAAUGCAAUGUAAUGUCGGAAUACUUCGCAACAUAGUUAAGAUAUUCUCUAAAAAAAAAUAUUAUGUUC ...(((...))).((((((((((((.....)))...))))))))).....(((((((((.((......)).))).))))))..................... ( -16.40) >DroSec_CAF1 39563 100 - 1 ACACUGUUUCAGAUACAUUGCAGGCAAUGUUGCAAAUGCAAUGUAAUGUUGCAAUACUUCGCAACAUGGUUAAGAUAUUCUUUAAA--AAAAUAUUGUGUUC ((((.........(((((((((.(((....)))...)))))))))(((((((........)))))))...................--........)))).. ( -25.70) >DroSim_CAF1 32723 100 - 1 ACACUGUUUCAGAUACAUUGCAGGCAAUGUUGCAAAUGCAAUGUAAUGUUGCAAUACUUCGCAACAUUGUUAAGAUAUUCUUUAAA--AAAAUAUUGUGUUC ((((.........(((((((((.(((....)))...)))))))))(((((((........)))))))...................--........)))).. ( -25.10) >DroEre_CAF1 33440 95 - 1 ACACUGUUUCAGAUACAUUGCAGCACAUGUUGCAAAUGCAAUGUACAGUUGCAAUGCUUUGCAACAUUUUUAAUAUAUUCUUAAA-------AAAUGUGUAU ((((..(((.(((((((((((((((.....)))...)))))))))..(((((((....))))))).............))).)))-------....)))).. ( -26.00) >DroYak_CAF1 40025 100 - 1 ACAUUGUUUCAGAUACAUUGCAU-AAAUGUUGCAAAUGCAAUUUACACUUGCAACACUUUGCAACAUUGUUAAUAUAUUGUUUAAGA-AAGAAAUUGUGUAC ((((.(((((.......(((((.-...((((((((.((.......)).))))))))...)))))..((.((((........)))).)-).))))).)))).. ( -22.30) >consensus ACACUGUUUCAGAUACAUUGCAGGAAAUGUUGCAAAUGCAAUGUAAUGUUGCAAUACUUCGCAACAUUGUUAAGAUAUUCUUUAAA__AAAAUAUUGUGUUC ((((.........(((((((((..............)))))))))..(((((........)))))...............................)))).. (-13.64 = -14.52 + 0.88)
Location | 2,680,040 – 2,680,159 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 91.43 |
Mean single sequence MFE | -34.57 |
Consensus MFE | -27.32 |
Energy contribution | -26.96 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.10 |
Mean z-score | -2.57 |
Structure conservation index | 0.79 |
SVM decision value | 1.99 |
SVM RNA-class probability | 0.984981 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2680040 119 + 27905053 GAAUAUCUUAACUAUGUUGCGAAGUAUUCCGACAUUACAUUGCAUUUGCAACAUUUACUGCAAUGUAUCUGAAACAGUGUUGCUGUAAGGACCGCUGCAAGCAGUGCAUCCUGCUCUGC ................((((..(((..(((..((.(((((((((..............)))))))))..))..((((.....))))..)))..)))))))((((.((.....)).)))) ( -29.04) >DroSec_CAF1 39583 119 + 1 GAAUAUCUUAACCAUGUUGCGAAGUAUUGCAACAUUACAUUGCAUUUGCAACAUUGCCUGCAAUGUAUCUGAAACAGUGUUGCUGUAAGGACCGCUGCAAGCAGUGCAUCCUGCUCUGC .............(((((((((....)))))))))(((((((((...(((....))).)))))))))......((((.....)))).((((.(((((....)))))..))))....... ( -35.10) >DroSim_CAF1 32743 119 + 1 GAAUAUCUUAACAAUGUUGCGAAGUAUUGCAACAUUACAUUGCAUUUGCAACAUUGCCUGCAAUGUAUCUGAAACAGUGUUGCUGUAAGGACCGCUGCAAGCAGUGCAUCCUGCUCUGC ............((((((((((....))))))))))((((((((...(((....))).)))))))).......((((.....)))).((((.(((((....)))))..))))....... ( -35.40) >DroEre_CAF1 33455 119 + 1 GAAUAUAUUAAAAAUGUUGCAAAGCAUUGCAACUGUACAUUGCAUUUGCAACAUGUGCUGCAAUGUAUCUGAAACAGUGUUGCUGUAAGGACCGCUGCAAGCAGUGCAUCCUGCUAUAG ...............(((((((....))))))).((((((((((...(((.....))))))))))))).....((((.....)))).((((.(((((....)))))..))))....... ( -34.10) >DroYak_CAF1 40046 118 + 1 CAAUAUAUUAACAAUGUUGCAAAGUGUUGCAAGUGUAAAUUGCAUUUGCAACAUUU-AUGCAAUGUAUCUGAAACAAUGUUGCUGUAAGGACCGCUGCAAGCAGUGCAUCCUGCUCUGC ...((((.((((((((((((((((((((((((((((.....)))))))))))))))-.))))))))...........))))).))))((((.(((((....)))))..))))....... ( -39.20) >consensus GAAUAUCUUAACAAUGUUGCGAAGUAUUGCAACAUUACAUUGCAUUUGCAACAUUUCCUGCAAUGUAUCUGAAACAGUGUUGCUGUAAGGACCGCUGCAAGCAGUGCAUCCUGCUCUGC .............((((((((((....(((((.......))))))))))))))).....((((..(..........)..)))).(((.(((.(((((....)))))..))))))..... (-27.32 = -26.96 + -0.36)
Location | 2,680,040 – 2,680,159 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 91.43 |
Mean single sequence MFE | -33.80 |
Consensus MFE | -25.66 |
Energy contribution | -26.10 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.10 |
Mean z-score | -2.46 |
Structure conservation index | 0.76 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939766 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2680040 119 - 27905053 GCAGAGCAGGAUGCACUGCUUGCAGCGGUCCUUACAGCAACACUGUUUCAGAUACAUUGCAGUAAAUGUUGCAAAUGCAAUGUAAUGUCGGAAUACUUCGCAACAUAGUUAAGAUAUUC (((.(((((......)))))))).(((((((..((((.....))))......((((((((((((.....)))...))))))))).....))).....)))).................. ( -29.80) >DroSec_CAF1 39583 119 - 1 GCAGAGCAGGAUGCACUGCUUGCAGCGGUCCUUACAGCAACACUGUUUCAGAUACAUUGCAGGCAAUGUUGCAAAUGCAAUGUAAUGUUGCAAUACUUCGCAACAUGGUUAAGAUAUUC (((.(((((......)))))))).((((........(((((((((...))).(((((((((.(((....)))...))))))))).))))))......)))).................. ( -37.64) >DroSim_CAF1 32743 119 - 1 GCAGAGCAGGAUGCACUGCUUGCAGCGGUCCUUACAGCAACACUGUUUCAGAUACAUUGCAGGCAAUGUUGCAAAUGCAAUGUAAUGUUGCAAUACUUCGCAACAUUGUUAAGAUAUUC (((.(((((......)))))))).((((........(((((((((...))).(((((((((.(((....)))...))))))))).))))))......)))).................. ( -37.64) >DroEre_CAF1 33455 119 - 1 CUAUAGCAGGAUGCACUGCUUGCAGCGGUCCUUACAGCAACACUGUUUCAGAUACAUUGCAGCACAUGUUGCAAAUGCAAUGUACAGUUGCAAUGCUUUGCAACAUUUUUAAUAUAUUC ((..((((((.((((((((.....))))).......))).).)))))..)).((((((((((((.....)))...)))))))))..(((((((....)))))))............... ( -33.51) >DroYak_CAF1 40046 118 - 1 GCAGAGCAGGAUGCACUGCUUGCAGCGGUCCUUACAGCAACAUUGUUUCAGAUACAUUGCAU-AAAUGUUGCAAAUGCAAUUUACACUUGCAACACUUUGCAACAUUGUUAAUAUAUUG (((.(((((......))))))))(((..........((((...(((.......)))))))..-.((((((((((((((((.......)))))....))))))))))))))......... ( -30.40) >consensus GCAGAGCAGGAUGCACUGCUUGCAGCGGUCCUUACAGCAACACUGUUUCAGAUACAUUGCAGGAAAUGUUGCAAAUGCAAUGUAAUGUUGCAAUACUUCGCAACAUUGUUAAGAUAUUC (((.(((((......)))))))).((((........(((((.(((...))).(((((((((..............)))))))))..)))))......)))).................. (-25.66 = -26.10 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:47 2006