Locus 7738

Sequence ID 3R_DroMel_CAF1
Location 20,778,669 – 20,778,774
Length 105
Max. P 0.572830
window12475

overview

Window 5

Location 20,778,669 – 20,778,774
Length 105
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 77.65
Mean single sequence MFE -30.90
Consensus MFE -21.49
Energy contribution -21.94
Covariance contribution 0.45
Combinations/Pair 1.16
Mean z-score -1.41
Structure conservation index 0.70
SVM decision value 0.08
SVM RNA-class probability 0.572830
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20778669 105 - 27905053
ACUGCGAUCGGCUAAUGGUAAUGAGCUGCAAGCUAUUUACAGUUUG----GCUACGGCCUUGCAGCCUAUAGAUGGCAAUUGGCCAUAUA----GCAUAUAGUCGCCCAAGCA--
...((...(((((((((.(((((.((((((((((......)))))(----((....)))..))))).)))..(((((.....))))).))----.))).)))))).....)).-- ( -35.30)
>DroSim_CAF1 21825 105 - 1
ACUGCGAUCGGCUAAUGGUAAUGAGCUGCAAGCUAUUUACAGUUUG----GCUGCGGCCUUGCAGCCUAUAGAUGGCAAUUGGCCAUAUA----GCAUAUAGUCGCCCAAGCC--
...(((((.(((((((.((((.(.((((((.((((.........))----))))))))))))).(((.......))).))))))).((((----...))))))))).......-- ( -34.00)
>DroEre_CAF1 22618 103 - 1
ACUGCGAUCGGCUAAUGGUAAUGAGCUGCAAGCUAUUUACAGUUUG----GCUGCGGCCUUGCAGCCCAUAGAUGGCAAUUGGCCAUAUA----UC----CGCCACCCAAGCCCA
.........((((..((((.(((.((((((((((.....(((....----.))).)).)))))))).)))..(((((.....)))))...----..----.))))....)))).. ( -32.90)
>DroWil_CAF1 26040 96 - 1
---GCCAUCGGCUAAUGGUAAUGAGCUGCAAGUUAUUUACAGUUUAAACUGCUGCGGCCUUGCACACUGUACAGA--------C--UCUAUUCACC----UGCCAGCCCACCU--
---......((((...((((.(((((((((.((..((((.....))))..))))))))(((((.....))).)).--------.--.....)))..----)))))))).....-- ( -20.70)
>DroYak_CAF1 20736 107 - 1
ACUGCGAUCGGCUAAUGGUAAUGAGCUGCAAGCUAUUUACAGUUUG----GCUGCGGCCUUGCAGCCCAUAGAUGGCAAUUGGCCAUAUAGUCAUC----CGCCCUCCUCCUUCA
...(((((.(((((......(((.((((((((((.....(((....----.))).)).)))))))).)))..(((((.....))))).))))))).----)))............ ( -31.60)
>consensus
ACUGCGAUCGGCUAAUGGUAAUGAGCUGCAAGCUAUUUACAGUUUG____GCUGCGGCCUUGCAGCCUAUAGAUGGCAAUUGGCCAUAUA____GC____AGCCACCCAAGCC__
.........(((........(((.((((((((((.....((((.......)))).)).)))))))).)))..(((((.....)))))..............)))........... (-21.49 = -21.94 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:17 2006