Locus 7737

Sequence ID 3R_DroMel_CAF1
Location 20,777,759 – 20,777,862
Length 103
Max. P 0.866740
window12474

overview

Window 4

Location 20,777,759 – 20,777,862
Length 103
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 74.86
Mean single sequence MFE -21.12
Consensus MFE -4.32
Energy contribution -5.00
Covariance contribution 0.68
Combinations/Pair 1.07
Mean z-score -1.86
Structure conservation index 0.20
SVM decision value 0.85
SVM RNA-class probability 0.866740
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20777759 103 - 27905053
UAAGUUUUCUUUGAAAGAAUA-CACAGAUUUGC-CCCGGGACAAGUCUGAUAGGCA--AAUCAACAUGCAAAACAAUGCAGCAUCUG----AAAAAAAAAAUGUACGAA-AA
...(((((.(((...(((...-....(((((((-(.((((.....))))...))))--))))....((((......))))...))).----..))).))))).......-.. ( -20.10)
>DroSim_CAF1 20908 101 - 1
UACGUUUUCUUUGAAAAAAUA-UACAGAUUUGC-CCCGGGACUUGGCUGAUAGGCA--AAUCAACAAGCAAAACAAUGCAGCAUCUG----AAAA--AAAAUGUACGAA-AA
((((((((.(((.(.......-....(((((((-(.(((.......)))...))))--)))).....(((......)))......).----))).--))))))))....-.. ( -19.90)
>DroEre_CAF1 21670 100 - 1
UAGGUUUUCUUUCAAAGACUA-CAGAGAUUUGC-CCCGGGACAUGUCUGAUAGGCA--AAUCAACAUGCAAAACAAUGCAGCAACUG-----AAA--AAAAUGUACAAC-AA
..((((((......)))))).-(((.(((((((-(.((((.....))))...))))--))))....((((......))))....)))-----...--............-.. ( -21.30)
>DroYak_CAF1 19767 102 - 1
UAAGUUUUCUUUCAAAGACCA-CAGAGAUUUGC-CCCGGGACAUGUCUGAUAGGCA--AAUCAACAUGCAAAACAAUGCAGCAACUG----GAAA--AAAAUGUACAAAAAA
...(((((.(((((.......-....(((((((-(.((((.....))))...))))--))))....((((......)))).....))----))).--))))).......... ( -20.60)
>DroAna_CAF1 19671 93 - 1
-----------UCAAAGUCAAGCAGAUCUUGGCCCCCGAGGCAGGUUAGAUAGGCAGAAAUCAACAUGCAAAACAAUGCAGAAUUUUUCGGGGGG--CUAUUC-----C-AC
-----------.............((...((((((((...((..((...))..)).((((......((((......)))).....)))).)))))--))).))-----.-.. ( -23.70)
>consensus
UAAGUUUUCUUUCAAAGACUA_CAGAGAUUUGC_CCCGGGACAUGUCUGAUAGGCA__AAUCAACAUGCAAAACAAUGCAGCAUCUG____AAAA__AAAAUGUACAAA_AA
.............................((((......(.(((((.((((........))))))))))........))))............................... ( -4.32 =  -5.00 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:16 2006