Locus 7734

Sequence ID 3R_DroMel_CAF1
Location 20,768,049 – 20,768,144
Length 95
Max. P 0.980781
window12470

overview

Window 0

Location 20,768,049 – 20,768,144
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 88.63
Mean single sequence MFE -30.00
Consensus MFE -27.49
Energy contribution -26.88
Covariance contribution -0.61
Combinations/Pair 1.26
Mean z-score -2.08
Structure conservation index 0.92
SVM decision value 1.87
SVM RNA-class probability 0.980781
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20768049 95 - 27905053
AAAUUAAACCCUUGUUUCUUUCCAGGUCCGCGCUGCAGACGCUGCACAAAGUGUCGAAAAAGGCUCGUGAGAACAACUUCUAUGCCAGUGGACCC
........................(((((((...(((((((((......))))))(((....(.((....)).)...)))..)))..))))))). ( -28.30)
>DroSec_CAF1 10413 95 - 1
GAUUGAAACCCUUGUUUCUUUCCAGGUCCGCGCUGCAGACGCUGCACAAAGUGUCGAAAAAGGCUCGUGAGAACAACUUCUAUGCCAGUGGACCC
((..(((((....)))))..))..(((((((...(((((((((......))))))(((....(.((....)).)...)))..)))..))))))). ( -33.00)
>DroSim_CAF1 11218 95 - 1
GAUUGAAACCCUUGUUUUUUUCCAGGUCCGCGCUGCAGACGCUGCACAAAGUGUCGAAAAAGGCUCGUGAGAACAACUUCUAUGCCAGUGGACCC
((..(((((....)))))..))..(((((((...(((((((((......))))))(((....(.((....)).)...)))..)))..))))))). ( -31.20)
>DroEre_CAF1 11958 95 - 1
CAAUGAAACCUUUGUUAUGUUCCAGGUCCGCGCUGCAGACGCUGCACAAAGUGUCGAAAAAGGCUCGUGAGAAUAACUUUUAUGCCAGUGGACCC
........................(((((((...(((((((((......))))))..(((((..((....))....))))).)))..))))))). ( -29.60)
>DroYak_CAF1 10065 95 - 1
UAAUGAAACCCUUGCUUCCUUCCAGGUCCGCGCUGCAGACGCUGCACAAAGUGUCGAAAAAGGCUCGUGAGAACAACUUCUAUGCCAGCGGACCC
........................(((((((...(((((((((......))))))(((....(.((....)).)...)))..)))..))))))). ( -30.20)
>DroAna_CAF1 10427 93 - 1
--UUAAAAUGUGAAUCUCCUUACAGGUCCGCGCUACAGACACUGCACAAGGUGUCGAACAAGGCUCGUGAAAGCAACUUCUAUGCCAGCGGUCCC
--......(((((......)))))((.((((......((((((......))))))......(((....(((......)))...))).)))).)). ( -27.70)
>consensus
GAAUGAAACCCUUGUUUCUUUCCAGGUCCGCGCUGCAGACGCUGCACAAAGUGUCGAAAAAGGCUCGUGAGAACAACUUCUAUGCCAGUGGACCC
........................(((((((......((((((......))))))......(((....(((......)))...))).))))))). (-27.49 = -26.88 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:12 2006