Locus 7732

Sequence ID 3R_DroMel_CAF1
Location 20,761,944 – 20,762,038
Length 94
Max. P 0.606270
window12467

overview

Window 7

Location 20,761,944 – 20,762,038
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 81.28
Mean single sequence MFE -20.82
Consensus MFE -16.50
Energy contribution -17.37
Covariance contribution 0.86
Combinations/Pair 1.05
Mean z-score -1.28
Structure conservation index 0.79
SVM decision value 0.15
SVM RNA-class probability 0.606270
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20761944 94 + 27905053
UCUUUCAUAAAGUCCUAUACACCUAUACUCACUUGAACGUACUUGCCGCGGAACUUGCUGGUCAUGGAGAACUCCUGCCAGCACGUCCAGUUCU
.........((((..((((....))))...))))((((((.......))(((...((((((.((.(((....)))))))))))..))).)))). ( -22.60)
>DroVir_CAF1 33185 90 + 1
UUUUUGGUCAAC---UAU-UACGAAAACUUACCUGCAAAUAUUUGCCGCGGAACUUGCUCGUCAUGGAAAACUCCUGCCAACAUACCCAAUCUU
...(((((....---...-.((((..........((((....)))).(((.....)))))))...(((....))).)))))............. ( -11.20)
>DroSec_CAF1 4349 94 + 1
UCGUUCAUAAAGUCCUAUAAACCGAUACUCACUUGAACGUACUUGCCGCGGAACUUGCUGGUCAUGGAGAACUCCUGCCAGCACGUCCAGUUCU
.((((((...(((.............)))....))))))..........(((...((((((.((.(((....)))))))))))..)))...... ( -24.22)
>DroSim_CAF1 5107 94 + 1
UCGUUUAUAAAGUCCUAUACACCGAUACUCACUUGAACGUACUUGCCGCGGAACUUGCUGGUCAUGGAGAACUCCUGCCAGCACGUCCAGUUCU
(((..((((......))))...))).........((((((.......))(((...((((((.((.(((....)))))))))))..))).)))). ( -23.00)
>DroEre_CAF1 5896 79 + 1
---------------UAUACAUCGAUACUCACUUGAACGUACUUGCCGCGGAACUUGCUGGUCAUGGAAAACUCCUGCCAGCACGUCCAGUUCU
---------------...................((((((.......))(((...((((((.((.(((....)))))))))))..))).)))). ( -21.60)
>DroYak_CAF1 4094 79 + 1
---------------UAUACACCGAUACUCACUUGAACGUACUUGCCGCGGAACUUGCUGGUCAUGGAGAACUCCUGCCAGCACGUCCAGUUCU
---------------...................((((((.......))(((...((((((.((.(((....)))))))))))..))).)))). ( -22.30)
>consensus
UC_UU_AUAAAG___UAUACACCGAUACUCACUUGAACGUACUUGCCGCGGAACUUGCUGGUCAUGGAGAACUCCUGCCAGCACGUCCAGUUCU
..................................((((((.......))(((...((((((.((.(((....)))))))))))..))).)))). (-16.50 = -17.37 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:10 2006