Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 20,757,646 – 20,757,745 |
Length | 99 |
Max. P | 0.617573 |
Location | 20,757,646 – 20,757,745 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 53.23 |
Mean single sequence MFE | -30.84 |
Consensus MFE | -12.54 |
Energy contribution | -15.10 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.30 |
Mean z-score | -1.32 |
Structure conservation index | 0.41 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617573 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20757646 99 - 27905053 -----AGCAAGUGACAGCGGCCAGGGUUGCCACCAUCAGCGGUGGAGCCGGCAGUGAUGCGAAAAUCACA----CUUUACUGCAGUCACUGAAUCCAAUCUAUCCUAA -----....((((((.((((((..((((.(((((......)))))))))))).(((((......))))).----......))).)))))).................. ( -34.30) >DroSim_CAF1 11984 98 - 1 -----AGCAAGUGACAGCGGCCAGGGUUGCCACCAUCAGCGGUGGAGCCGGCAGUGAUGCGAACAUCACA----CUAUACU-CAGUCACUGAAUCCAAUCUAUGCUAA -----((((((((((....(((..((((.(((((......)))))))))))).((((((....)))))).----.......-..))))))((......))..)))).. ( -36.00) >DroYak_CAF1 12219 103 - 1 -----AGCAAGUGACAGCGGCCAGGGUUGCCACCUUCGGCAGCAGAGCCGGCAGUGAUGCGAAAAUCACAGUCACCGUAAUAAAGUCACUGUUUCCAAUCAGUCCAAA -----((((.(((((...(((....((((((......))))))...)))(((.(((((......))))).)))...........)))))))))............... ( -33.10) >DroPer_CAF1 9598 103 - 1 GAGGUCCGGUGACUGCAUCAAGCUCCCCGAAAAUGGCCGCACUGUCGAUCCGCUUGCCACUCUUAAUUUC----CUGCUCC-AGAGCCUUGACAGACUUCUCGACGGC ..(((((((.((((......)).)).))).....))))...(((((((...(..((.((((((.......----.......-))))...)).))..)...))))))). ( -19.94) >consensus _____AGCAAGUGACAGCGGCCAGGGUUGCCACCAUCAGCAGUGGAGCCGGCAGUGAUGCGAAAAUCACA____CUGUACU_AAGUCACUGAAUCCAAUCUAUCCUAA .........((((((....(((..((((.(((((......)))))))))))).(((((......)))))...............)))))).................. (-12.54 = -15.10 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:09 2006