| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,749,858 – 20,749,963 |
| Length | 105 |
| Max. P | 0.641180 |
| Location | 20,749,858 – 20,749,963 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 79.70 |
| Mean single sequence MFE | -26.07 |
| Consensus MFE | -15.52 |
| Energy contribution | -15.86 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.641180 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20749858 105 - 27905053 ----------CCAUUAAAC---AGAACUUACUGGUCUUUUGAAGUCCUGCCCAGCGCUUAUCAAUGUCUUCGACAUUGGCAACCUCAAUAGGACUCUGAAAGGAUACAGUUCGUGACA ----------.........---...((..((((.((((((..(((((((...((.(.((..(((((((...)))))))..)))))...)))))))..))))))...))))..)).... ( -28.90) >DroSec_CAF1 8986 105 - 1 ----------CCAUUAAAC---AGAACUUACUGCUCUUUUUAAGUCCUGUCCAGCGCUUAUCAAUGUCCUCGACAUUGGCAAUCUCAAUAGGACUCUGAAAGGAUACAGUUCGUGGCA ----------((((.....---.(((((...((..(((((..((((((((..((...((..(((((((...)))))))..)).))..))))))))..)))))..)).))))))))).. ( -28.90) >DroSim_CAF1 8948 115 - 1 UAAUGGUUAUCCAUUAAAC---AGAACUUACUGCUCUUUUUAAGUCCUGUCCAGCGCUUAUCAAUGUCCUCGACAUUGGCAAUCUCAAUAGGACUCUGAAAGGAUACAGUUCGUGGCA ((((((....))))))..(---((((((...((..(((((..((((((((..((...((..(((((((...)))))))..)).))..))))))))..)))))..)).))))).))... ( -33.70) >DroEre_CAF1 9264 105 - 1 ----------CUAUUAUAC---AGAACUUACUACUCUUUUGAAGGCCCUUCCAGCGUUUAUCAAUGUCCUCGACAAUGGCAAUCUCGAUGGGACUCUGAAAGGAUACAGUUCGUGACA ----------......(((---.(((((...((..(((((..((.(((.((.((...((..((.((((...)))).))..)).)).)).))).))..)))))..)).))))))))... ( -23.30) >DroYak_CAF1 9051 105 - 1 ----------CUAUUGUAU---AGAACUUACUACUCUUUUGAAGUUCCUUCCAACGCUUAUCAAUGUCCUCGACAAUGGCAAUCUCAACGGGACUCUGAAAGGAUACAGUUCGUGACA ----------....(((..---.(((((...((..(((((..((((((.........((..((.((((...)))).))..)).......))))))..)))))..)).)))))...))) ( -22.19) >DroAna_CAF1 8432 106 - 1 ----------G--UUAAAUGCAAAAACUCACUCUUCUUGUUCAGUACCUCCCAGCGCUUGUCUAUGUCAGUCACACUGGCAAUCUCAAUGGGGCUUUGAAAAGAAACCGUCUUGGAUA ----------.--....................(((((.(((((....(((((....(((....((((((.....))))))....))))))))..)))))))))).((.....))... ( -19.40) >consensus __________CCAUUAAAC___AGAACUUACUGCUCUUUUGAAGUCCCGUCCAGCGCUUAUCAAUGUCCUCGACAUUGGCAAUCUCAAUAGGACUCUGAAAGGAUACAGUUCGUGACA .......................(((((...((..(((((..((((((.........((..((.((((...)))).))..)).......))))))..)))))..)).)))))...... (-15.52 = -15.86 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:08 2006