| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,732,971 – 20,733,079 |
| Length | 108 |
| Max. P | 0.948032 |
| Location | 20,732,971 – 20,733,079 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 62.78 |
| Mean single sequence MFE | -33.10 |
| Consensus MFE | -10.19 |
| Energy contribution | -10.72 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.31 |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.948032 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20732971 108 + 27905053 UAGCAAGCAACCUCAAGCUGUCAUGUCACCUGGAACUGAACUGAAGU----GCGCCAAA---CUGCACUAA-GCUGGCAGCUUGGCAUUUCAAAGUUGAGGUUG-CCUGCCGGAAAA-- ..(((.((((((((((((..(((..(((........)))..)))...----))(((((.---((((.(...-...))))).))))).........)))))))))-).))).......-- ( -40.50) >DroVir_CAF1 36995 100 + 1 ----CGGCA-AAUGAAGGCGGCUCAA-------AGUGCGCCUAAUGU----CCAUCAAAACGUGGCCCUAA-ACUGGCAGCUUGGCAUUUCAAAGCUGUGCUUGGGCUGCCGGAAAA-- ----.(((.-.....(((((((....-------.)).))))).((((----........)))).)))....-.(((((((((((((((.........)))).)))))))))))....-- ( -34.30) >DroGri_CAF1 38122 98 + 1 ----CAACG-ACAACAGCCAGC--AA-------CAAUCAACUAAUGU----CCAUCAAAGCGUAGCCCUAAAAGUGCCAGCUUGGCAUUUCAAAGUUGAGGUUG-GCUGCCGGAAAA-- ----.....-....((((((((--..-------...((((((.((((----........))))........(((((((.....)))))))...)))))).))))-))))........-- ( -28.30) >DroWil_CAF1 34908 81 + 1 AAACC-A-GAACUCAAGCUGUCA----------------CCU-------------GGAA---UUGAAUUUG-GCUGGCAGCUUGGCAUUUCAAAGUUGAGGUUG-CCUGCCGGAAAA-- ...((-.-......(((((((((----------------.(.-------------.((.---.....))..-).)))))))))(((((((((....))))).))-))....))....-- ( -26.00) >DroYak_CAF1 30960 112 + 1 UGGCAAGCAACCUCAAGCUGUCAUGUCACCUGGAACUGAACUGAAGUACAUAAGCCGAG---UCGCACUGA-ACUGGCAGCUUGGCAUUUCAAAGUUGAGGUUG-CCUGCCGGAAAA-- .((((.(((((((((((((.(((..(((........)))..))))))......((((((---(.((.(...-...))).))))))).........)))))))))-).))))......-- ( -42.60) >DroMoj_CAF1 37693 98 + 1 ----AGACAAAAUAAAGGCGGCUCGA-----------CGCCUAAUGU----CCAUCACAGUGUGGCCCUAA-ACUGACAGCUUGGCAUUUCAAAGUUGAGGUUG-GCUGCCGGAAAAAC ----............((((((.(((-----------((((...(((----.....)))....))).....-........((..((........))..))))))-))))))........ ( -26.90) >consensus ____AAACAAACUCAAGCCGGCA_GA_______AA_UCAACUAAUGU____CCAUCAAA___UGGCACUAA_ACUGGCAGCUUGGCAUUUCAAAGUUGAGGUUG_CCUGCCGGAAAA__ .........................................................................(((((((((..((........))..))......)))))))...... (-10.19 = -10.72 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:59 2006