Locus 7723

Sequence ID 3R_DroMel_CAF1
Location 20,732,192 – 20,732,292
Length 100
Max. P 0.726074
window12455

overview

Window 5

Location 20,732,192 – 20,732,292
Length 100
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 82.17
Mean single sequence MFE -28.33
Consensus MFE -19.03
Energy contribution -20.45
Covariance contribution 1.42
Combinations/Pair 1.04
Mean z-score -2.05
Structure conservation index 0.67
SVM decision value 0.41
SVM RNA-class probability 0.726074
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20732192 100 - 27905053
AAUGCAACCAAGUAAGUGUCAUAUGGUCACACGUUGCGUAUGCGUAAUUUGCGUUAAGCAUACGACAGCGAGCCGCAACCAAAUA---AGCAGCAGAACCAAG---
..(((......))).........(((((...((((((((((((.((((....)))).))))))).))))).((.((.........---.)).)).).))))..--- ( -25.90)
>DroPse_CAF1 28899 96 - 1
AAUGCAGACAA----GUGUCAUAUGGUCACACGCUGCGUAUGCGUAAUCUGCGUUAAGCAUACGUCUAGGGGACCAGACCAAAGA---AGCCGCAGAACAAAC---
..(((.(((..----..)))...(((((...(...((((((((.((((....)))).))))))))...)..))))).........---....)))........--- ( -27.10)
>DroEre_CAF1 33728 96 - 1
AAUGCAACAAAG----UGUCGUAUGGUCACACGCUGCGUAUGCGUAAUUUGCGUUAAGCAUACGACAGCGAGCCGCAACCAAAGA---AGCAACAGAACCAAG---
..(((......(----((.(.....).))).((((((((((((.((((....)))).))))))).)))))....)))........---...............--- ( -27.10)
>DroYak_CAF1 30159 103 - 1
AAUGCAACAAAGUGAGUGUCAUAUGGUCACACGCUGCGUAUGCGUAAUUUGCGUUAAGCAUACGACAGCGAGCCGCAGCCAAAAAGGCAGCAGCAGAACCAAG---
...........(((.....))).(((((...((((((((((((.((((....)))).))))))).))))).((.((.(((.....))).)).)).).))))..--- ( -35.10)
>DroAna_CAF1 28580 103 - 1
AAUGCAGCUAAGUACGUGUCAUAUGGUCACACGCUGCGUAUGCGUAAUUUGCGUUAAGCAUACGCCAGCGAGUCCAAGCCGAAAA---GCCAACAGAAUCAAGCAA
..(((.(((..(.(((((.(.....).))).((((((((((((.((((....)))).))))))).))))).)))..))).(....---..)...........))). ( -27.70)
>DroPer_CAF1 29213 96 - 1
AAUGCAGACAA----GUGUCAUAUGGUCACACGCUGCGUAUGCGUAAUCUGCGUUAAGCAUACGUCUAGGGGACCAGACCAAAGA---AGCCGCAGAACAAAC---
..(((.(((..----..)))...(((((...(...((((((((.((((....)))).))))))))...)..))))).........---....)))........--- ( -27.10)
>consensus
AAUGCAACCAAG___GUGUCAUAUGGUCACACGCUGCGUAUGCGUAAUUUGCGUUAAGCAUACGACAGCGAGCCCAAACCAAAGA___AGCAGCAGAACCAAG___
..(((..........(((.(.....).))).((((((((((((.((((....)))).))))))).)))))......................)))........... (-19.03 = -20.45 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:58 2006