Locus 7720

Sequence ID 3R_DroMel_CAF1
Location 20,727,381 – 20,727,481
Length 100
Max. P 0.529738
window12452

overview

Window 2

Location 20,727,381 – 20,727,481
Length 100
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 84.26
Mean single sequence MFE -38.03
Consensus MFE -26.01
Energy contribution -26.02
Covariance contribution 0.00
Combinations/Pair 1.31
Mean z-score -2.18
Structure conservation index 0.68
SVM decision value -0.01
SVM RNA-class probability 0.529738
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20727381 100 - 27905053
UUGCUGCAGGUGGACCAGCUGCAGUCUACCGCAACAUUUCCGCAACUGAUCGCCAUUCGUCUGCUUCACAUGGACGGUGAAGAUCAGGUGU-----GGGCAAUCG
(((((((.(((((((........))))))))))......(((((.((((((..(((.(((((.........))))))))..)))))).)))-----))))))... ( -39.80)
>DroSec_CAF1 23636 100 - 1
UUGCUGCAGGUGGACCAGCUGCAGUCUACCGCAAAAUUUCCGCAACUGAUCGCCAUUCGUCUGUUUUACAUGGACGGUGAAGAUCAGGUGC-----GGGCAAUCG
(((((((.(((((((........))))))))))......(((((.((((((..(((.(((((((.....))))))))))..)))))).)))-----))))))... ( -43.00)
>DroSim_CAF1 24626 100 - 1
UUGCUGCAGGUGGACCAGCUGCAGUCUACCGCAAAAUUUCCGCAACUGAUCGCCAUUCGUCUGCUUUACAUGGACGGUGAAGAUCAGGUGC-----GGGCAAUCG
(((((((.(((((((........))))))))))......(((((.((((((..(((.(((((.........))))))))..)))))).)))-----))))))... ( -41.70)
>DroEre_CAF1 28823 100 - 1
UUGCUGCAGGUGAACCAGCUGCAGUCUGCCGCAACAUUUCCGCAACUGAUCGCCAUUCGUCUGCUUCACAUGCACGGUGAAGAUCAGGUGC-----GGGUAAUCG
..(((((((.((...)).))))))).............((((((.((((((....(((..((((.......))).)..))))))))).)))-----)))...... ( -35.00)
>DroYak_CAF1 25154 100 - 1
UUGCUGCAGGUGGACCAGCUGCAGUCUGCCGCAACAUUUCCGCAACUGAUCGCCAUUCGUCUGCUUCACAUGGACGGUGAAGAUCAGGUGC-----GGGUAAACG
.((.(((.((..(((........)))..))))).))..((((((.((((((..(((.(((((.........))))))))..)))))).)))-----)))...... ( -39.00)
>DroPer_CAF1 24022 105 - 1
ACUCUUCAGGUGAAUAAACUGCAGCUUGCCGUAGACUUUUCUCGACUGAUCGAUGUUCGUUUGCCUCACGUUGAGGGUGAAGAGCACACGGCUAUGAGGCAGGCG
.....((((..(((....((((.(....).))))....)))....))))........(((((((((((.((((...(((.....))).))))..))))))))))) ( -29.70)
>consensus
UUGCUGCAGGUGGACCAGCUGCAGUCUACCGCAAAAUUUCCGCAACUGAUCGCCAUUCGUCUGCUUCACAUGGACGGUGAAGAUCAGGUGC_____GGGCAAUCG
(((((((.(((((((........))))))))).........(((.((((((..(((.((((((.......)))))))))..)))))).)))......)))))... (-26.01 = -26.02 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:56 2006