Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 20,726,150 – 20,726,269 |
Length | 119 |
Max. P | 0.668991 |
Location | 20,726,150 – 20,726,269 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.59 |
Mean single sequence MFE | -37.52 |
Consensus MFE | -27.91 |
Energy contribution | -28.25 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.28 |
Mean z-score | -1.50 |
Structure conservation index | 0.74 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20726150 119 + 27905053 UUUGCAGCUCCUGGUCGAAGGCCGUUGUGUUGGGACAGAGGAAUCGAUAGUCCUGCACCUGUUGGACAAACGGAUUAGCUCUUCGAUGAAGGAGCUGCGCAAAAUACAGC-GAAAGCAUC ...(((((((((.(((((((((....((((.(((((.((....))....)))))))))(((((.....)))))....)).)))))))..)))))))))..........((-....))... ( -49.10) >DroVir_CAF1 27636 114 + 1 UCUGUAGCUCCUGAUCGAAGGCAGUGCUAUUUGGGCAGAGGAAGCGAUAGUCCUGCACCUGUUGGACAAACGAAUUAACUCUUCGAUGUGAGAGCUGCGCAA---ACAGU-AAA--CGGC ...((((((((..(((((((((((..(((((...((.......)))))))..)))).((....))...............)))))))..).)))))))....---.....-...--.... ( -34.90) >DroGri_CAF1 29568 115 + 1 UCUGCAGCUCUUGAUCGAAGGCCGUGCUAUUUGGGCAGAGGAAGCGAUAGUCCUGCACCUGUUGGACAAACGAAUUAACUCUUCGAUGUGAGAGCUGCGCAA---ACAGACAAA--CGGC ...((((((((((((((((((((.((((.....))))..))........((((.((....)).))))............)))))))).))))))))))....---.........--.... ( -39.10) >DroWil_CAF1 27923 113 + 1 UUUGCAGCUCUUGAUCAAACGCAGUGGUAUUUGGGCAGAGGAACCGAUAAUCCUGCACCUGUUGGACAAACGAAUUAACUCUUCGAUGUAUGAGCUGCGCA--AUAC-----AAAACAGC ...((((((((((.......((((.(((..((((.........))))..))))))).((....)).))).((((.......))))......)))))))...--....-----........ ( -28.50) >DroMoj_CAF1 27748 112 + 1 UCUGCAGCUCUUGAUCGAAGGCAGUGCUGUUUGGGCAGAGGAAGCGAUAGUCCUGCACCUGUUGGACAAACGAAUUAUUUCUUCGAUGUGAGAGCUGCGCAA---ACAGU-UAG--CC-- ...(((((((((((((((((((((..(((((...((.......)))))))..)))).((....))...............))))))).))))))))))....---.....-...--..-- ( -39.50) >DroAna_CAF1 22613 112 + 1 UCUGAAGCUCCUGGUCAAAGGCCGUCGUGUUGGGGCAGAGGAAGCGGUAGUCCUGCACCUGUUGGACAAACGGAUUAACUCUUCGGUGUAGCAGCUGCCCCCAA--------AAAGCAUC ......(((...(((.....)))........(((((((.....((((.....))))..((((((.((....(((.....)))...)).)))))))))))))...--------..)))... ( -34.00) >consensus UCUGCAGCUCCUGAUCGAAGGCAGUGCUAUUUGGGCAGAGGAAGCGAUAGUCCUGCACCUGUUGGACAAACGAAUUAACUCUUCGAUGUAAGAGCUGCGCAA___ACAG___AA__CAGC ...((((((((((((((((((..((...(((((......(....)....((((.((....)).))))...)))))..)))))))))).))))))))))...................... (-27.91 = -28.25 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:55 2006