| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,725,792 – 20,725,902 |
| Length | 110 |
| Max. P | 0.500000 |
| Location | 20,725,792 – 20,725,902 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 84.99 |
| Mean single sequence MFE | -27.08 |
| Consensus MFE | -18.84 |
| Energy contribution | -18.95 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20725792 110 - 27905053 UAAAGAGAUAUC-------UUUAAUUGCAGGCGAUAUACGUCGCUCUAAGGAGAACCACAAUAAUAACAAUAUUAACAACAAUCGUGGAGCGGACCAAAAACCACGCCAUCGCCACA ((((((....))-------))))......((((((...(((.((((((.((....))....(((((....)))))..........))))))((........)))))..))))))... ( -25.10) >DroSec_CAF1 22031 110 - 1 UAAAGAGAUAUC-------UUUAAUUGCAGGCGAUGUACGUCGCUCUAAGGAGAACCACAAUAAUAACAAUAUUAACAACAAUCGUGGAGCGGACCAAAAACCACGACAUCGCCACA ((((((....))-------))))......((((((((.(((.((((((.((....))....(((((....)))))..........))))))((........)))))))))))))... ( -31.00) >DroSim_CAF1 22796 110 - 1 UAAAGAGAUAUA-------UUUAAUUGCAGGCGAUGUACGUCGCUCUAAGGAGAACCACAAUAAUAACAAUAUUAACAACAAUCGUGGAGCGGACCAAAAACCACGACAUCGCCACA ............-------..........((((((((.(((.((((((.((....))....(((((....)))))..........))))))((........)))))))))))))... ( -27.60) >DroEre_CAF1 27208 110 - 1 AACAGAGUUGUC-------UUUAUUUGCAGGCGAUGUACGUCGCUCUAAGGAGAACCACAACAAUAACAAUAUCAAUAACAAUCGUGGAGCGGAGCAAAAACCACGCCAUCGCCACA ....(.(((.((-------((((...((.((((.....))))))..)))))).))))...........................((((.(((..(......)..))).....)))). ( -22.70) >DroYak_CAF1 23509 110 - 1 UACAGGGUUAUC-------UUUAAUUGCAGGCGAUGUACGUCGCUCGAAGGAGAACCACAACCAUAACAAUAUCAACAACAAUCGUGGAGCGGAGCAAAAGGCACGCCAUCGCCCCA ....((((((..-------..))))....(((((((.......(((....)))..((((.........................)))).(((..((.....)).)))))))))))). ( -25.61) >DroAna_CAF1 22093 114 - 1 AACAUAGCUUUAAUGCUUUUCAAAUUUUAGGCGAUGUGCGUCGCUCGAAGGAGAACCACAAA---AACAACAUCAACAAUAACCGCGGUGCGGAUCAAAAGUCGCGCCCUCGCCACA .....(((......)))............(((((((((.((..(((....))).))))))..---.....................(((((((........))))))).)))))... ( -30.50) >consensus UAAAGAGAUAUC_______UUUAAUUGCAGGCGAUGUACGUCGCUCUAAGGAGAACCACAAUAAUAACAAUAUCAACAACAAUCGUGGAGCGGACCAAAAACCACGCCAUCGCCACA .............................(((((((...((..(((....)))....))........................(((((.............))))).)))))))... (-18.84 = -18.95 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:54 2006