Locus 7717

Sequence ID 3R_DroMel_CAF1
Location 20,725,238 – 20,725,340
Length 102
Max. P 0.500000
window12449

overview

Window 9

Location 20,725,238 – 20,725,340
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 84.74
Mean single sequence MFE -37.23
Consensus MFE -25.60
Energy contribution -27.43
Covariance contribution 1.84
Combinations/Pair 1.26
Mean z-score -2.27
Structure conservation index 0.69
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20725238 102 + 27905053
GAAGAGCUAUCCAGGAAGUCCGUGUUGAAGGUGGCAUGCAGGGUGAUCUUCUUCAGGGACUUGGUCGUGCUGGGAGCAGCGGUGCUGGAUGGAAUCGGACUA
...((.((((((((.((((((.((..((((((.((.......)).))))))..)).)))))).....(((((....)))))...))))))))..))...... ( -40.30)
>DroPse_CAF1 21673 99 + 1
GGCGUAUAGUCCAGGAAGUCCGUGUUGAAUGAGGCAUGCAGAGUGAUCUUUUUCACCGAUUUGGUGGUGCUUGGAGCUGCGGUGCU---UGGGGUUGUGCUA
...(((((..((...((((((((...(..(.((((((..(((....)))....((((.....)))))))))).)..).)))).)))---).))..))))).. ( -30.40)
>DroSec_CAF1 21480 102 + 1
GGAGAGCUGUCCAGGAAGUCCGUGUUGAAGGUGGCAUGCAGGGUGAUCUUCUUCAGGGACUUGGUAGUGCUGGGAGUAGCGGUGCUGGAUGGGAUCGGACUA
...((.((((((...((((((.((..((((((.((.......)).))))))..)).))))))((((.(((((....))))).))))))))))..))...... ( -38.40)
>DroEre_CAF1 26654 102 + 1
GGAGAGCUGUCCAGAAAGUCCGUGUUGAAGGUGGCAUGCAAGGUGAUCUUCUUCAGGGACUUGGUAGUGCUGGGAACAGUGGUGCUGGAUGGGAUCGCACUA
..((.((.((((...((((((.((..((((((.((.......)).))))))..)).))))))((((.(((((....))))).)))).....)))).)).)). ( -40.50)
>DroYak_CAF1 22917 102 + 1
GGUGAGCUGUCCAGGAAGUCCGUGUUGAAGGUGGCAUGCAGCGUGAUCUUCUUCAGGGACUUGGUGGUGCUGGGAGCAGCGGUGCUGGACGGGAUCGGACUA
..(((.((((((...((((((.((..((((((.((.......)).))))))..)).))))))((((.(((((....))))).))))))))))..)))..... ( -43.40)
>DroPer_CAF1 21714 99 + 1
GGCGUAUAGUCCAGGAAGUCCGUGUUGAAUGAGGCAUGCAGAGUGAUCUUUUUCACCGAUUUGGUGGUGCUUGGAGCUGCGGUGCU---UGGGGUUGUGCUA
...(((((..((...((((((((...(..(.((((((..(((....)))....((((.....)))))))))).)..).)))).)))---).))..))))).. ( -30.40)
>consensus
GGAGAGCUGUCCAGGAAGUCCGUGUUGAAGGUGGCAUGCAGGGUGAUCUUCUUCAGGGACUUGGUGGUGCUGGGAGCAGCGGUGCUGGAUGGGAUCGGACUA
......((((((...((((((.((..((((((.((.......)).))))))..)).))))))((((.(((((....))))).)))))))))).......... (-25.60 = -27.43 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:53 2006