Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 20,718,750 – 20,718,845 |
Length | 95 |
Max. P | 0.903673 |
Location | 20,718,750 – 20,718,845 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 74.78 |
Mean single sequence MFE | -15.52 |
Consensus MFE | -6.82 |
Energy contribution | -7.42 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.05 |
Structure conservation index | 0.44 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903673 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20718750 95 + 27905053 UCUUUUGCGUUAUUGCAAAAAAAAAGAACCCAUAAG-CUAUGCAAACUAUUCUAA-GGCGCAUAAAAAGUUAUUUAUGUGCUUAAAGUAUAAACAUA ..(((((((....)))))))................-.(((((...((......)-)(((((((((......))))))))).....)))))...... ( -17.80) >DroSec_CAF1 15055 79 + 1 UCUUUUGCAUUUUGGCAAA---AAAGAACCCAUA--------------AUUCUAA-GCGGCAUAAAAAAUUAUUUAUGUGCUUGAAGUAUAAACAUA ..((((((......)))))---)........(((--------------.(((.((-(((.((((((......)))))))))))))).)))....... ( -15.10) >DroSim_CAF1 15952 79 + 1 UCUUUUGCAUUUUGGCAAA---AAAGAACCCAUA--------------AUUCUAA-GGCGCAUAAAAAGUUAUUUAUGUGCUUGAAGUAUAAACAUA ..((((((......)))))---)........(((--------------.(((..(-((((((((((......)))))))))))))).)))....... ( -17.00) >DroEre_CAF1 15989 76 + 1 ACGUUUGCAUUCUUACAAA---AAA------------------UAACUAUUCUAAUGGCGCAUAAAAACAUAUUUAUGUGGUUGAACUAUAAACAUA ..(((((..(((..((...---...------------------...((((....))))((((((((......)))))))))).)))...)))))... ( -10.30) >DroYak_CAF1 16251 92 + 1 AAGUUUGCAUUUUUGCACA---AAA--ACCCAUAAACCCAUGCUAACUAUUCUAAGGGCGCAUAAAAACACAUUUAUGUGGCUGAAGUAUAAACAUA ..(((((.(((((.((...---...--.........(((................)))((((((((......)))))))))).))))).)))))... ( -17.39) >consensus UCUUUUGCAUUUUUGCAAA___AAAGAACCCAUA__________AACUAUUCUAA_GGCGCAUAAAAACUUAUUUAUGUGCUUGAAGUAUAAACAUA ...(((((......))))).......................................((((((((......))))))))................. ( -6.82 = -7.42 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:50 2006