Locus 7714

Sequence ID 3R_DroMel_CAF1
Location 20,718,022 – 20,718,129
Length 107
Max. P 0.577132
window12445

overview

Window 5

Location 20,718,022 – 20,718,129
Length 107
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 74.58
Mean single sequence MFE -16.16
Consensus MFE -8.20
Energy contribution -7.30
Covariance contribution -0.90
Combinations/Pair 1.33
Mean z-score -1.67
Structure conservation index 0.51
SVM decision value 0.09
SVM RNA-class probability 0.577132
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20718022 107 + 27905053
ACAAAUCAG----GGAGCCCCGUUAGCGGUCAUAAUAAUACUGUUAACUAAUUUACGCCACAAA-AAACGGCGGCAAAAAGCGACGACAAUGGGAA-AAUCUAGAAAAACAAU
.....((((----(....((((((((((((.........))))))))).......((((.....-....))))((.....)).........)))..-..))).))........ ( -21.60)
>DroPse_CAF1 14359 99 + 1
ACAAAUCAUCAUCAGGGCUCCGUUAACAGCUAUAAUAAUACUGUUAACUAAUUUACGCCAGAACC--ACAGCCACAAU-----------AGGGAAA-AAUCAAGAAAAACAAA
.....((........((((..((((((((.(((....))))))))))).......(....)....--..)))).....-----------...))..-................ ( -13.39)
>DroEre_CAF1 15262 105 + 1
ACAAAUCAU----GGAGCCCCGUUAGCGGCUAUAAUAAUACUGUUAACUAAUUUACGCCACAAAA--ACGCCGGC-AAAAACGACGACAAUGGGAA-AAUCAAGAAAAACAAU
.....((.(----((...(((((((((((.(((....)))))))))))........(((......--.....)))-...............)))..-..))).))........ ( -17.60)
>DroYak_CAF1 15500 100 + 1
ACAAAUCAU----GGAGCCCCGUUAGCGGCCAUAAUAAUACUGUUAACUAAUUUGCGCCACAAAU--AA-----A-AAAAACGACGACAAUGGGAA-AAUGAAGAAAAACAAU
.....((((----....(((.((((((((...........))))))))..(((((.....)))))--..-----.-...............)))..-.))))........... ( -15.80)
>DroAna_CAF1 14589 89 + 1
ACAAAUCAU----CAGGCCCCGUUAGCGGCUAUAAUAAUACUGUUAACUAAUUUACGCCA--------------------GCAACAACAAUGGGAAAAAUGUUGAAAAACAAA
.........----.....(((((((((((.(((....)))))))))))........(...--------------------.).........))).....((((....)))).. ( -15.20)
>DroPer_CAF1 14439 99 + 1
ACAAAUCAUCAUCAGGGCUCCGUUAACAGCUAUAAUAAUACUGUUAACUAAUUUACGCCAGAACC--ACAGCCACAAA-----------AGGGAAA-AAUCAAGAAAAACAAA
.....((........((((..((((((((.(((....))))))))))).......(....)....--..)))).....-----------...))..-................ ( -13.39)
>consensus
ACAAAUCAU____GGAGCCCCGUUAGCGGCUAUAAUAAUACUGUUAACUAAUUUACGCCACAAA___AC_GC__C_AA___CGACGACAAUGGGAA_AAUCAAGAAAAACAAA
..................(((((((((((...........))))))))............(...........)..................)))................... ( -8.20 =  -7.30 +  -0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:49 2006