| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,715,388 – 20,715,499 |
| Length | 111 |
| Max. P | 0.512544 |
| Location | 20,715,388 – 20,715,499 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 90.17 |
| Mean single sequence MFE | -28.58 |
| Consensus MFE | -21.95 |
| Energy contribution | -23.98 |
| Covariance contribution | 2.03 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.77 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.512544 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20715388 111 - 27905053 AGCAUCUAUCGCACAACGUGGCCAGCAAUUUGCAUACUGGCUUUUGCCGGCCAGCAGCGACAACGAUUGGGCACAAAAAAACGUGCUAAAAAUCAAACAAAAA-CCCCAACG ........((((......(((((.((((...((......))..)))).)))))...))))....((((.(((((........)))))...)))).........-........ ( -30.00) >DroSec_CAF1 11789 111 - 1 AGCAUCUAUCGCACAACGUGGCCAGCAAUUUGCAUACUGGCUUUUGCCGGCCAGCAGCGACAACGAUUGGGCACAAAAAAACGUGCUAAAAAUCAAACAAAAC-CCCCAACG ........((((......(((((.((((...((......))..)))).)))))...))))....((((.(((((........)))))...)))).........-........ ( -30.00) >DroSim_CAF1 12688 111 - 1 AGCAUCUAUCGCACAACGUGGCCAGCAAUUUGCAUACUGGCUUUUGCCGGCCAGCAGCGACAACGAUUGGGCACAAAAAAACGUGCUAAAAAUCAAACAAAAA-CCCCAACG ........((((......(((((.((((...((......))..)))).)))))...))))....((((.(((((........)))))...)))).........-........ ( -30.00) >DroEre_CAF1 12578 110 - 1 GGCAUCUAUCGCACAACGUGGCCAGCAAUUUGCAUACUGGCUUUUGCCGGCCAGCAGCGACCACGAUUGGGCACA-AAAAACGUGCUAAAAAUCAAACAGAAA-CCCCAACC ((..(((.((((......(((((.((((...((......))..)))).)))))...))))....((((.(((((.-......)))))...))))....)))..-))...... ( -32.30) >DroYak_CAF1 12830 112 - 1 GGCAUCUAUCGCACAACGUGGCCAGCAAUUUGCAUACUGGCUUUUGCCGGCCAGCAGCGACAACGAUUGGGCACAGAAAAACGUGCUAAAAAUCAAACAAAAAGCCCCAACA (((.....((((......(((((.((((...((......))..)))).)))))...))))....((((.(((((........)))))...)))).........)))...... ( -34.80) >DroAna_CAF1 12004 93 - 1 AGCAUCUAUCGCAAAACGUGGCCAGCAAUUUGCAUACUCGCUUUUGUCAGCCAGCAAC------------------AAAAACGUGCUAAAAAUCAAACAAAAA-CCCGAACA ........(((........(((..((((...((......))..))))..)))((((.(------------------......)))))................-..)))... ( -14.40) >consensus AGCAUCUAUCGCACAACGUGGCCAGCAAUUUGCAUACUGGCUUUUGCCGGCCAGCAGCGACAACGAUUGGGCACAAAAAAACGUGCUAAAAAUCAAACAAAAA_CCCCAACG ........((((......(((((.((((...((......))..)))).)))))...))))....((((.(((((........)))))...)))).................. (-21.95 = -23.98 + 2.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:48 2006