Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 20,712,295 – 20,712,460 |
Length | 165 |
Max. P | 0.976624 |
Location | 20,712,295 – 20,712,391 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 85.17 |
Mean single sequence MFE | -20.59 |
Consensus MFE | -14.03 |
Energy contribution | -14.70 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.14 |
Mean z-score | -2.40 |
Structure conservation index | 0.68 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755883 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20712295 96 + 27905053 CUCCGAUAGUGGUACUUACCAUAUGCACUAAAAACUAUCUGCUAUCU-AACUAGCAUUCUAAGGUAUAUGCUUUAUAUGUAUCUUUCAUGAUAUAUU ....(((((((((....))).............))))))(((((...-...)))))...((((((....)))))).(((((((......))))))). ( -16.51) >DroSec_CAF1 8765 96 + 1 CCCAGAUAGUGGUACUUACCAUAUGCACUAAAAACUAUCUGCAAACU-AACUAGGCUACUAAGGUGUUUACUCAUUAUAUAUCCUUCAGGAUAUAUU .....(((((((((..((((...((((............))))....-...(((....))).))))..))).))))))((((((....))))))... ( -20.50) >DroSim_CAF1 9638 97 + 1 CUGAGAUAGUGGUACUUACCAUAUGCACUAAAAACUAUCUGCUAACUUAGUUAGCCUUCUAAGGUGUAUGCUGAUUAUAUAUCCUUCGGGAUAUAUU ........(((((....)))))(((((((...........((((((...)))))).......))))))).......((((((((....)))))))). ( -24.77) >consensus CUCAGAUAGUGGUACUUACCAUAUGCACUAAAAACUAUCUGCUAACU_AACUAGCCUUCUAAGGUGUAUGCUCAUUAUAUAUCCUUCAGGAUAUAUU ..........((((..((((....(((............))).........(((....))).))))..))))....((((((((....)))))))). (-14.03 = -14.70 + 0.67)
Location | 20,712,330 – 20,712,427 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 76.84 |
Mean single sequence MFE | -18.00 |
Consensus MFE | -10.73 |
Energy contribution | -9.97 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.35 |
Mean z-score | -2.42 |
Structure conservation index | 0.60 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976624 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20712330 97 + 27905053 UAUCUGCUAUCU-AACUAGCAUUCUAAGGUAUAUGCUUUAUAUGUAUCUUUCAUGAUAUAUUCAGAUUCAGAUGUGAUUUCCUUCCAAAUAGAAUUCA ((((((..((((-....(((((..........)))))....(((((((......)))))))..)))).))))))(((.(((..........))).))) ( -16.50) >DroSec_CAF1 8800 88 + 1 UAUCUGCAAACU-AACUAGGCUACUAAGGUGUUUACUCAUUAUAUAUCCUUCAGGAUAUAUUCCAAUUCAGAU-UGAUUUCCUUCUAAUU-------- .(((((.((((.-..((((....)).))..)))).......((((((((....)))))))).......)))))-................-------- ( -13.40) >DroSim_CAF1 9673 90 + 1 UAUCUGCUAACUUAGUUAGCCUUCUAAGGUGUAUGCUGAUUAUAUAUCCUUCGGGAUAUAUUCCAAUUCAGGUAUGAUUUCCUUCUAAUU-------- .....((((((...)))))).....((((..((((((((..((((((((....))))))))......))).)))))....))))......-------- ( -24.10) >consensus UAUCUGCUAACU_AACUAGCCUUCUAAGGUGUAUGCUCAUUAUAUAUCCUUCAGGAUAUAUUCCAAUUCAGAU_UGAUUUCCUUCUAAUU________ ((((((.....................((((((((.....)))))))).....(((.....)))....))))))........................ (-10.73 = -9.97 + -0.77)
Location | 20,712,351 – 20,712,460 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 74.68 |
Mean single sequence MFE | -17.47 |
Consensus MFE | -8.15 |
Energy contribution | -9.60 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.17 |
Mean z-score | -2.89 |
Structure conservation index | 0.47 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.834336 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20712351 109 + 27905053 UCUAAGGUAUAUGCUUUAUAUGUAUCUUUCAUGAUAUAUUCAGAUUCAGAUGUGAUUUCCUUCCAAAUAGAAUUCAAUUCACAUUUUUCCAUCAUUCGUAAAUUCUCUC ..((((((....)))))).(((((((......)))))))...(((..((((((((.....(((......)))......))))))))....)))................ ( -15.10) >DroSec_CAF1 8821 97 + 1 ACUAAGGUGUUUACUCAUUAUAUAUCCUUCAGGAUAUAUUCCAAUUCAGAU-UGAUUUCCUUCUAAUU-----------AAUCUAUGCCCAUCAUUCGUAACUUUUCUC .....((((..........((((((((....))))))))........((((-(((((.......))))-----------))))).....))))................ ( -16.90) >DroSim_CAF1 9695 98 + 1 UCUAAGGUGUAUGCUGAUUAUAUAUCCUUCGGGAUAUAUUCCAAUUCAGGUAUGAUUUCCUUCUAAUU-----------AAUCUAUGCCCAUCAUUCGUUACUACUCAC .....((((.....(((..((((((((....))))))))......)))(((((((((...........-----------)))).)))))))))................ ( -20.40) >consensus UCUAAGGUGUAUGCUCAUUAUAUAUCCUUCAGGAUAUAUUCCAAUUCAGAU_UGAUUUCCUUCUAAUU___________AAUCUAUGCCCAUCAUUCGUAACUUCUCUC .....((.(((((......((((((((....))))))))......(((....)))............................)))))))................... ( -8.15 = -9.60 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:44 2006