Locus 7710

Sequence ID 3R_DroMel_CAF1
Location 20,710,626 – 20,710,717
Length 91
Max. P 0.790940
window12436

overview

Window 6

Location 20,710,626 – 20,710,717
Length 91
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 82.15
Mean single sequence MFE -22.38
Consensus MFE -14.00
Energy contribution -14.24
Covariance contribution 0.24
Combinations/Pair 1.12
Mean z-score -2.09
Structure conservation index 0.63
SVM decision value 0.59
SVM RNA-class probability 0.790940
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20710626 91 + 27905053
CCAGCCAGUGGUUACCCCAGCUACUCCCCCUUGCUGUUCCUCCAGUGACCACACCCAGUUCUCGAAAUGGGGUUCCUCCACC------GUUAACCAC
.......((((((((..((((...........))))........)))))))).............(((((((.....)).))------)))...... ( -19.90)
>DroSec_CAF1 7080 91 + 1
CCAGCCAGUGGUUACCCAAGCUACUCCCCCUUGCUGUUCCUCCAGUGACCACACCCAGGUCUCGAAAUGGGGUUCCCCCACC------GUUACCCAC
.......((((((((...((..((...........))..))...)))))))).....(((..((...(((((...))))).)------)..)))... ( -23.20)
>DroSim_CAF1 7960 91 + 1
CCAGCCAGUGGUUACCCCAGCUACUCCCCCUUGCUGUUCCUCCAGUGACCACACCCAGGUCUCGAAAUGGGGUUCCCCCACC------GUUAACCAC
.......((((((((..((((...........))))........)))))))).....(((..((...(((((...))))).)------)...))).. ( -24.10)
>DroEre_CAF1 7720 89 + 1
-CAGCCAGUGGUUACCCCAGCUACUACCC----C--UUCCUCCAGUGGCCACACCCAUGUCUCGAAAUGGGCUUC-CCCACUCAACCUCUUAACCAC
-......(((((((.....((((((....----.--.......))))))....(((((........)))))....-..............))))))) ( -19.70)
>DroYak_CAF1 7959 87 + 1
-CAGCCAGUGGUUACCCCAGCUACUGCCCAGUAC--UUCCUCCAGUGGCCACACCCAUGUGUCUCCAUGGCUGAC-CCCAUG------GUCAACGAC
-.(((((.(((........(((((((...((...--...)).)))))))((((....))))...))))))))(((-(....)------)))...... ( -25.00)
>consensus
CCAGCCAGUGGUUACCCCAGCUACUCCCCCUUGCUGUUCCUCCAGUGACCACACCCAGGUCUCGAAAUGGGGUUCCCCCACC______GUUAACCAC
.......((((((((...((..((...........))..))...))))))))...............((((.....))))................. (-14.00 = -14.24 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:41 2006