Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,677,052 – 2,677,168 |
Length | 116 |
Max. P | 0.797646 |
Location | 2,677,052 – 2,677,168 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.65 |
Mean single sequence MFE | -15.98 |
Consensus MFE | -15.10 |
Energy contribution | -15.30 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.28 |
Structure conservation index | 0.94 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.797646 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2677052 116 + 27905053 ACCAUAUAAAAGUAUA----GAAAAAAACAAAUGAUGGAAAAUAAAUGAAAAACUAAAAAAAAAAAAUCAUAAGAGAGACGCCUGCGUGUACUUCUGUAAUUGGAGUUGAUGUUGGCGAU .((((......((...----.......)).....)))).........................................((((.((((..(((((.......)))))..)))).)))).. ( -17.40) >DroSec_CAF1 36477 114 + 1 AGCAUAUAAA-AUAUA----GAAAAAAACAAAAGAUGGAAAAUAAAUGAAAAACUAAAAAA-AGAAAUCAUAAGAGAGACGCCUGCGUGUACUUCUGUAAUUGGAGUUGAUGUUGGCGAU ..........-.....----.........................................-.................((((.((((..(((((.......)))))..)))).)))).. ( -15.80) >DroSim_CAF1 29675 112 + 1 AGCAUAUAAA-GUAUA----GAAAAAA--AAAAGAUGGAAAAUAUAUGAAAAACUAAAAAA-AGAAAUCAUAAGAGAGACGCCUUCGUGUACUUCUGUAAUUGGAGUUGAUGUUGGCGAU ..........-.....----.......--...............(((((....((......-))...))))).......((((..(((..(((((.......)))))..)))..)))).. ( -15.10) >DroYak_CAF1 36960 112 + 1 AGCAUAUAAAAGUAUA----GAAAAAA-AAAAAUUUGG-AAAUAAAUGAAAAACUAAAA-A-ACAAAUCAUAAAAGAGACGCCUGCGUGUACUUCUGUAAUUGGAGUUGAUGUUGGCGAU ................----.......-..........-....................-.-.................((((.((((..(((((.......)))))..)))).)))).. ( -15.80) >DroAna_CAF1 24709 118 + 1 AGCAAAUAAAAAUAUGUUUAAAAAAAG-AAGAAGAUGGAAAAUAAAUGAAAAACUAAAAAA-AGAAAUCAUAAGAGAGACGCCUGCGUGUACUUCUGUAAUUGGAGUUGAUGUUGGCGAU ...........................-.................................-.................((((.((((..(((((.......)))))..)))).)))).. ( -15.80) >consensus AGCAUAUAAAAGUAUA____GAAAAAA_AAAAAGAUGGAAAAUAAAUGAAAAACUAAAAAA_AGAAAUCAUAAGAGAGACGCCUGCGUGUACUUCUGUAAUUGGAGUUGAUGUUGGCGAU ...............................................................................((((.((((..(((((.......)))))..)))).)))).. (-15.10 = -15.30 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:40 2006