Locus 7702

Sequence ID 3R_DroMel_CAF1
Location 20,682,313 – 20,682,411
Length 98
Max. P 0.795159
window12423

overview

Window 3

Location 20,682,313 – 20,682,411
Length 98
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 78.78
Mean single sequence MFE -32.65
Consensus MFE -18.63
Energy contribution -18.08
Covariance contribution -0.55
Combinations/Pair 1.48
Mean z-score -1.97
Structure conservation index 0.57
SVM decision value 0.60
SVM RNA-class probability 0.795159
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20682313 98 + 27905053
AAC-UACUUCUGUUUAGAUUACUUACCAGCUCCUUGGGAACAUCGAGAGGAGUCGGGAAAACAAACCAGAUGACUGCCUCGGCACAGGGAGGAGUAGUA
.((-(((((((..............((.(((((((..(.....)..))))))).)).........((...((..(((....))))).))))))))))). ( -30.10)
>DroSec_CAF1 1477 98 + 1
AAC-UACUUCUGUUUGGCCUACUCACCAGCUCCUUGGGGACAUCGAGAGGUGUUGGGAAAACAAACCAGAUGACUGCCUCGGCGCAGGGAGGAGUGGUA
.((-((((((((((((.((((..((((..(((..((....))..))).)))).))))....))))).......((((......))))..))))))))). ( -36.80)
>DroSim_CAF1 1493 98 + 1
AAC-UACUUCUGUUUGGACUACUCACCAGCUCUUUGGGGACAUCGAGAGGAGUUGGGAAAACAAACCAGAUGACUGCCUCGGCGCAGGGAGGAGUGGUA
.((-(((((((((((((........(((((((((((....)).....))))))))).........))))))..((((......))))..))))))))). ( -35.13)
>DroEre_CAF1 1506 98 + 1
AAC-CUCUUUCUUUUGGGCCACUCACCAGCUCCUUGGGUACAUCCAGAGGAGUCUGGAAAACAAACCAGAUGACUGCCUCGGCACAGGGAGGAGUGGUG
..(-(..........))(((((((.....(((((((((.....)).((((.((((((........)))))).....))))....)))))))))))))). ( -36.50)
>DroYak_CAF1 1461 98 + 1
AAC-CUCCUCAUUUUGGCCCACUCACCAGCUCCUUGGGAACCUCAAGGGGAGUCUGGAAAACGAACCAGAUGACUGCCUCAGCGCAGGGCGGAGUGGUA
...-..............((((((.((..(((((((((...))))))))).((((((........))))))..((((......))))))..)))))).. ( -34.80)
>DroMoj_CAF1 1605 96 + 1
AAUUUACUUUUUUU---UUCGCUUACAUAUCGCUUGGAAAUUUCAAUAGGUUUGGGGAAAACAAACCAGUUGACAACUUCAGAACAUGGUGGUGUGGUA
..............---........(((((((((((((....(((((.((((((.......)))))).)))))....))))......)))))))))... ( -22.60)
>consensus
AAC_UACUUCUGUUUGGACCACUCACCAGCUCCUUGGGAACAUCGAGAGGAGUCGGGAAAACAAACCAGAUGACUGCCUCGGCACAGGGAGGAGUGGUA
..................((((((.....(((((((((....))..((((((((.((........))....)))).))))....))))))))))))).. (-18.63 = -18.08 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:28 2006