Locus 7701

Sequence ID 3R_DroMel_CAF1
Location 20,681,401 – 20,681,521
Length 120
Max. P 0.836627
window12422

overview

Window 2

Location 20,681,401 – 20,681,521
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.50
Mean single sequence MFE -39.73
Consensus MFE -29.44
Energy contribution -29.08
Covariance contribution -0.35
Combinations/Pair 1.52
Mean z-score -1.08
Structure conservation index 0.74
SVM decision value 0.73
SVM RNA-class probability 0.836627
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20681401 120 - 27905053
GCUGAUGGCCUUCGUCCCGAAUCGAUACAUUCAGCGUUCCUAUUUGCGACCCAUGCGCUUUCAAGCAGCCGGUUCCAUUUUGGCCGGUAAGCUGGCAUUGGAUUAUGGUUGGGCCAUCAA
..((((((((...(((.(((((.(..((.......))..).))))).)))...............((((((..((((.....(((((....)))))..))))...)))))))))))))). ( -41.80)
>DroPse_CAF1 578 120 - 1
GCUGAUGGCUUUCGUUCCCAACAAGUACCUGCAGCAGGCCUAUCUGCGUCCGAUGCGCUUCCAGGCGGCCGGCUCCAUUCUGGCCGGAAAACUGGCCCUGGACUAUGGCUGGGCCAUCAA
..((((((((.................((((....((((.((((.......)))).)))).))))((((((..((((....((((((....)))))).))))...)))))))))))))). ( -45.00)
>DroGri_CAF1 584 120 - 1
CGUCAUGAUCUUUAUGCCCAAUUUCACGGUGCAAAGCGGAUAUUUGCGUCCGAUGCGUUAUCAGGCAUCCGGCUCAAUAUUGGCUGGUAAACUGGCCUUGGAAUAUGGCUGGGCUAUCAA
.....((((......(((((......((((....(((.((((((.(.(((.(((((........))))).))).))))))).))).....))))(((.........)))))))).)))). ( -37.40)
>DroWil_CAF1 15881 120 - 1
ACUGCUAAGUUUCGUACCCAAUACAUAUGUCCAAUCGUGCUACUUGCGUCCGAUGCGUUUCCAAACUGCCGGCUCCAUUUUGGCCGGCAAGUUGGCCUUGGAAUACGGAUGGUCUAUCAA
...((.((((...((((.....((....))......)))).))))))(.((.((.(((((((((((((((((((.......))))))).))).....)))))).))).)))).)...... ( -33.00)
>DroAna_CAF1 578 120 - 1
GGUGAUGGCCUUUGUCCCAAAUCGAUUCAUCCAAAGCUCUUACCUACGACCCAUGCGUUUCCAGGCCGCCGGCUCUAUUUUGGCCGGUAAACUAGCCUUGGAUUAUGGCUGGGCCAUUAA
..(((((((((..(((.(.....)....((((((.(((....((((((.......)))....)))..(((((((.......))))))).....))).))))))...))).))))))))). ( -36.20)
>DroPer_CAF1 578 120 - 1
GCUGAUGGCUUUCGUUCCCAACAAGUACCUGCAGCAGGCCUAUCUGCGUCCGAUGCGCUUCCAGGCGGCCGGCUCCAUUCUGGCCGGAAAACUGGCCCUGGACUAUGGCUGGGCCAUCAA
..((((((((.................((((....((((.((((.......)))).)))).))))((((((..((((....((((((....)))))).))))...)))))))))))))). ( -45.00)
>consensus
GCUGAUGGCCUUCGUCCCCAAUAAAUACAUGCAACGGGCCUAUCUGCGUCCGAUGCGCUUCCAGGCAGCCGGCUCCAUUUUGGCCGGUAAACUGGCCUUGGAAUAUGGCUGGGCCAUCAA
..((((((((...................................(((.......))).......((((((..((((....((((((....)))))).))))...)))))))))))))). (-29.44 = -29.08 +  -0.35)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:27 2006