| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,679,198 – 20,679,298 |
| Length | 100 |
| Max. P | 0.592387 |
| Location | 20,679,198 – 20,679,298 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 79.41 |
| Mean single sequence MFE | -25.36 |
| Consensus MFE | -16.86 |
| Energy contribution | -17.94 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.592387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20679198 100 + 27905053 CUGCCCACUCUUUAAGGCCGCAUCUUAUCCGGGCAGUCA------GCUCACCAAUUUGCCUCCGAUGCGGUAAGUUAGCUAUAAACAUGCCUAUACUUGGAUUUAU ....((..........((((((((......((((((...------..........))))))..))))))))(((((((.(((....))).))).))))))...... ( -22.22) >DroSec_CAF1 2722 100 + 1 CUGUCCACUCUUCAAGGCCGCAUCUUAUCCGGGCAGUCA------GCUCACCAAUUUGCCUCCGAUGCGGUAAGUUAGCUAUAAACAUUCCUAUGCUUGGAUUUAU ..(((((.........((((((((......((((((...------..........))))))..)))))))).....(((.(((........))))))))))).... ( -24.12) >DroSim_CAF1 2662 100 + 1 CUGUCCACUCUUCAAGGCCGCAUCUUAUCCGGGCAGUCA------GCUCACCAAUUUGCCCCCGAUGCGGUAAGUUAGCUAUAAGCAUGCCUAUGCUUGGAUUUAU ..((((..........((((((((......((((((...------..........))))))..))))))))...........((((((....)))))))))).... ( -29.12) >DroEre_CAF1 1652 100 + 1 CUGCCCACUUUUCAAGGCCGCAUCUUAUCCGGGCAGUCA------GCUAACCAAUUUACCUCCGAUGCGGUAAGUGCACUGUAAAUAGGCCUUGGCUUGGAUUUAU ....(((....((((((((...........((..((...------.))..)).(((((((........)))))))............))))))))..)))...... ( -26.20) >DroYak_CAF1 1619 100 + 1 CUGCCCACUUUUCAAGGCCGCAUCCUAUCCUGGCAGCCA------GCUAACCAAUUUGCCUCCGAUGCGGUAAGUUCACUUUAAAUAGGUAUUGGCUUGAAUUUAC ..........((((((.(((...(((((..((((.....------))))...((((((((........))))))))........)))))...)))))))))..... ( -23.20) >DroPer_CAF1 2825 90 + 1 CUGCCCGCUCUUCAAGGCCGCUUCCUAUCCAGGCAGUCCCAAGGGUCUGCCCA---UGCCUCCGAUGCGGUAAGCUCGUUAUUACAA-GC------------UAAU ....((((...((.((((.............(((((.((....)).)))))..---.))))..)).))))..((((.((....)).)-))------------)... ( -27.29) >consensus CUGCCCACUCUUCAAGGCCGCAUCUUAUCCGGGCAGUCA______GCUCACCAAUUUGCCUCCGAUGCGGUAAGUUAGCUAUAAACAUGCCUAUGCUUGGAUUUAU ..........((((((((((((((......((((((...................))))))..)))))))).((....))...............))))))..... (-16.86 = -17.94 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:26 2006