Locus 77

Sequence ID 3R_DroMel_CAF1
Location 500,587 – 500,690
Length 103
Max. P 0.672129
window134

overview

Window 4

Location 500,587 – 500,690
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 79.20
Mean single sequence MFE -17.00
Consensus MFE -1.94
Energy contribution -2.18
Covariance contribution 0.24
Combinations/Pair 1.10
Mean z-score -1.84
Structure conservation index 0.11
SVM decision value 0.29
SVM RNA-class probability 0.672129
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 500587 103 - 27905053
CAUCUUUCCAGGAACCACACAGAAAGCACAAAUAGUUGAAUUCCUAAGUAUUAUAAAAGAUUUGU-UUUUCACCACAACGAACAUUUUCCUUAUG----UAUCCUCAU------------
.........((((........(((((.((((((..((.(((........)))...))..))))))-)))))..........((((.......)))----).))))...------------ ( -11.60)
>DroSec_CAF1 28681 104 - 1
CAUCUUUCCAGGAACCACACAGAAAGCACAAAUAGUUUAAUUCCUAAGGAUUAUAAAAGAUUUGUAUUUUCACCACAAAGAACAUUUUCUUUAUG----UAUCCACAU------------
..........(((........(((((.((((((..((((..(((...)))...))))..)))))).)))))..((.((((((....)))))).))----..)))....------------ ( -18.50)
>DroSim_CAF1 28722 104 - 1
CAUCUUUCCAGGAACCACACAGAAAGCACAAAUAGUUUAAUUCCUAAGGAUUAUUAAAGAUUUGUGUUUUCAUCACAACUAACAUUUUCUUUAUG----UAUCCACAU------------
..........(((........((((((((((((..(((((((((...)))..)))))).))))))))))))..........((((.......)))----).)))....------------ ( -21.90)
>DroEre_CAF1 32273 102 - 1
CAUAUUUCCAGGAACCACACAGAAAGCAAAAAUAGUUUAAUUCCUGAGGAAU--AAAGGAAUUGUAUUUUGACCACAACAAAAACUUU-UUUAUG---AUGUCCAUAU------------
..((((((((((((....((..............))....)))))).)))))--)..(((((..(((((((.......))))).....-..))..---)).)))....------------ ( -14.15)
>DroYak_CAF1 47885 118 - 1
CAUGUUUCCACGAACCACACAGAAAGCAAAAAUAGUCUAAUUUCUGAGGAAUAUAACGAAAUUGUAUUUUGACCACAAA-AAAUGUUC-UUUAUACAUAUGUACAUAUAUGUAUGUUCAU
...........((((....((((((...............))))))((((((((.(((....))).(((((....))))-).))))))-)).(((((((((....))))))))))))).. ( -18.86)
>consensus
CAUCUUUCCAGGAACCACACAGAAAGCACAAAUAGUUUAAUUCCUAAGGAUUAUAAAAGAUUUGUAUUUUCACCACAACGAACAUUUUCUUUAUG____UAUCCACAU____________
......((((((((....((..............))....)))))..)))...................................................................... ( -1.94 =  -2.18 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:28 2006