Locus 7699

Sequence ID 3R_DroMel_CAF1
Location 20,677,314 – 20,677,428
Length 114
Max. P 0.735235
window12420

overview

Window 0

Location 20,677,314 – 20,677,428
Length 114
Sequences 3
Columns 114
Reading direction forward
Mean pairwise identity 94.74
Mean single sequence MFE -38.10
Consensus MFE -36.74
Energy contribution -36.30
Covariance contribution -0.44
Combinations/Pair 1.06
Mean z-score -1.67
Structure conservation index 0.96
SVM decision value 0.43
SVM RNA-class probability 0.735235
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20677314 114 + 27905053
CGAAACGGUCACACGCAACACUGCAAUUUCUGGACGCGAUUUCGUGGGAAUCUUCGAUGGAAAUGCGUCUGAAUGCGGCUUCCAUAUGGCUGUUAAUACUGUCGUAUGGAGCAA
..............((....(((((..(((.(((((((.((((((.(((...))).)))))).)))))))))))))))..((((((((((.((....)).)))))))))))).. ( -40.50)
>DroEre_CAF1 14306 114 + 1
CGGAACGGUCACACGCAUCACUACAAUUUCUGGACGCGAUUUCGUGGGAUUCUUCGAUGGAGAUGCGUCUGAAUGCGGCUUCCAUAUGGCUGCUAAUACUGUCGUAUGGAGCUA
.....((.(((.(((((((.((((..........((((....)))).((....))).))).))))))).))).)).((((.(((((((((..........))))))))))))). ( -36.50)
>DroYak_CAF1 14604 114 + 1
CGGAACGGUCACACGCGUCUCUACAAUUUCUGGACGCGAUUUCGUGGGAAUCUUCGAUGGAAAUGCGUCUGAAUGCGGCUUCCAUAUGGCUGCUAAUACUGUCGUAUGGAGCUA
.(..(((........)))..)......(((.(((((((.((((((.(((...))).)))))).))))))))))...((((.(((((((((..........))))))))))))). ( -37.30)
>consensus
CGGAACGGUCACACGCAUCACUACAAUUUCUGGACGCGAUUUCGUGGGAAUCUUCGAUGGAAAUGCGUCUGAAUGCGGCUUCCAUAUGGCUGCUAAUACUGUCGUAUGGAGCUA
.............((((..........(((.(((((((.((((((.(((...))).)))))).))))))))))))))(((.(((((((((.(......).)))))))))))).. (-36.74 = -36.30 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:25 2006