Locus 7698

Sequence ID 3R_DroMel_CAF1
Location 20,673,978 – 20,674,098
Length 120
Max. P 0.769108
window12419

overview

Window 9

Location 20,673,978 – 20,674,098
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.61
Mean single sequence MFE -47.68
Consensus MFE -32.06
Energy contribution -32.62
Covariance contribution 0.56
Combinations/Pair 1.26
Mean z-score -1.76
Structure conservation index 0.67
SVM decision value 0.52
SVM RNA-class probability 0.769108
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20673978 120 - 27905053
CCACAGCAUCCUGGCUGUUGUACUUGGGGAGCCAUCCGAGGAUCGGGAGUCUCUUGUGCAGGGUCUUGCGAUUGAAGGUGCGCCGCUGGCAAUCCUGCAGCCAACUGCGUGUGCAGUCCA
.(((((((...(((((((....((((((......))))))(((((.(((.((((.....)))).))).)))))..(((...(((...)))...))))))))))..))).))))....... ( -43.10)
>DroPse_CAF1 11612 120 - 1
CGACUGCAUCCUGGCUGCUGUAACGCGGCAGCCACCCAAGAAUGGGCAGUUUUUUGUGCAGGGUCUUGCGGUUGAAGGUCCUUCUGCUGCACUCCUGCAGCCAGCUCUUGGUGCACUCCA
.((.((((...(((((((((.....))))))))).((((((.(((((((....))))((((((...((((((.((((...)))).)))))).))))))..)))..)))))))))).)).. ( -55.00)
>DroEre_CAF1 10971 120 - 1
CCACAGCAUCCUGGCUGUUGUACUUAGGCAGCCAUCCGAGGAUCGGCAGCUUCUUGUGCAGGGUUUUGCGGUUGAAGGUGCGCCUUUUGCAGUCCUUCAGCCAACUACGGGUGCACUCCA
.....((((((.((((.((((((..((((.((((((....))).))).))))...))))))))))....(((((((((((((.....))))..)))))))))......))))))...... ( -46.40)
>DroYak_CAF1 11265 120 - 1
CCACAGCAUCCUGGCUGUUGUACUUUGGCAGCCAGCCGAGGAUCGGCAGUCUCUUGUGCAGGGUUUUGCGAUUGAAGGUGCGUCGCUGGCAGUCCUGCAGCCAACUACGGGUGCAGUCCA
.....((((...((((((((..(((((((.....)))))))..))))))))....)))).(((......(((((..((((...))))..)))))(((((.((......)).)))))))). ( -46.80)
>DroAna_CAF1 11024 120 - 1
CGACAGCAUCCUGACUAUUAUAGCGGGGAAGCCAAGAUAGUAUGGGCAGUCUUUUGUGCAGAGUUUUGCGGUUGAAGGUCCUGCGGCCGCAAUUUUGUAGCCAACUGCGGGUGCAUUCCA
.....((((((..((((((...((......))...))))))....(((((......((((((((..((((((((.((...)).))))))))))))))))....)))))))))))...... ( -39.80)
>DroPer_CAF1 11606 120 - 1
CGACUGCAUCCUGGCUGCUGUAUCGCGGCAGCCACCCAAGAAUGGGCAGUUUUUUGUGCAGGGUCUUGCGGUUGAAGGUCCUUCUGCUGCACUCCUGCAGCCAGCUCUUGGUGCACUCCA
.((.((((...(((((((((.....))))))))).((((((.(((((((....))))((((((...((((((.((((...)))).)))))).))))))..)))..)))))))))).)).. ( -55.00)
>consensus
CCACAGCAUCCUGGCUGUUGUACCGCGGCAGCCACCCGAGGAUCGGCAGUCUCUUGUGCAGGGUCUUGCGGUUGAAGGUCCGUCGGCUGCAAUCCUGCAGCCAACUACGGGUGCACUCCA
.....((((((((((((((.......))))))))..........(((.........(((((((..((((((..(.........)..))))))))))))))))......))))))...... (-32.06 = -32.62 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:24 2006