Locus 7697

Sequence ID 3R_DroMel_CAF1
Location 20,671,674 – 20,671,791
Length 117
Max. P 0.670859
window12418

overview

Window 8

Location 20,671,674 – 20,671,791
Length 117
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 74.42
Mean single sequence MFE -24.20
Consensus MFE -14.16
Energy contribution -15.64
Covariance contribution 1.48
Combinations/Pair 1.06
Mean z-score -1.65
Structure conservation index 0.59
SVM decision value 0.29
SVM RNA-class probability 0.670859
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20671674 117 + 27905053
CAAAUAUAGCAUUUUAUAAUGAUGUCUGGUACGGAGAUGAUGAUAUUAAUACAAGUCAGCGCGCCGAAGGCAGAUCAAUUAGCCUUGUCGCGAACUCAUUGAUAAGGCAAUAUCUCA
......(((((((.......)))).))).....((((((.((.(((((((...(((...((((.(.(((((..........)))))).)))).))).)))))))...)).)))))). ( -26.90)
>DroSec_CAF1 8694 104 + 1
CAAAUAUAGCAUUUUAU-------------ACGGAGAUGAUGAUAUUAAUACAAGUCAGCGCGCUGAAGGCAAAUCAAUUAGCCUUGUCGCGUACUCAUUGAUAAGGCAAUAUCUCA
.................-------------...((((((.((.(((((((...(((..(((((...(((((..........)))))..)))))))).)))))))...)).)))))). ( -24.30)
>DroSim_CAF1 8519 104 + 1
CAAAUAUAGCAUUUUAU-------------ACGGAGAUGAUGAUAUUAAUACAAGUCAGCGCGCUGAAGGCAAAUCAAUUAGCCUUGUCGCGUACUCAUUGAUAAGGCAAUAUCUCA
.................-------------...((((((.((.(((((((...(((..(((((...(((((..........)))))..)))))))).)))))))...)).)))))). ( -24.30)
>DroEre_CAF1 8767 98 + 1
CAAAUCUG-------ACGAUGAUAUCUG-----GAG-------CGUUAAUACAAGUCAGCGCGAUGGAGGCAAAUCAAUUAGCCUUGUCGAGUACUUAUUGAUCAGGCAAUACCUCA
....((((-------(((((((...((.-----(((-------((((.((....)).)))))....(((((..........))))).)).))...)))))).))))).......... ( -23.40)
>DroYak_CAF1 9000 95 + 1
CAAAAGUG-------AUGAUAAUAUCUG-----GAG-------UAUUAAUACAAGUCAGU---AUUAAUACAAAUCAAUUAGCCUUGUCGAGUACUUACUGAUCAGGCAAUACCUCA
........-------............(-----(.(-------(((((((((......))---))))))))..........((((.(((.(((....)))))).))))....))... ( -22.10)
>consensus
CAAAUAUAGCAUUUUAU_AU_AU_UCUG__ACGGAGAUGAUGAUAUUAAUACAAGUCAGCGCGCUGAAGGCAAAUCAAUUAGCCUUGUCGCGUACUCAUUGAUAAGGCAAUAUCUCA
.................................((((((...................((.(......)))..........(((((((((.........)))))))))..)))))). (-14.16 = -15.64 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:23 2006