Locus 7696

Sequence ID 3R_DroMel_CAF1
Location 20,660,419 – 20,660,537
Length 118
Max. P 0.634391
window12417

overview

Window 7

Location 20,660,419 – 20,660,537
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 87.37
Mean single sequence MFE -27.19
Consensus MFE -22.38
Energy contribution -22.02
Covariance contribution -0.36
Combinations/Pair 1.12
Mean z-score -1.51
Structure conservation index 0.82
SVM decision value 0.21
SVM RNA-class probability 0.634391
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20660419 118 - 27905053
CAGCGAACGGAAAGGAAGUCCAGAAAAUAUAUUCACGAAAAUCGGUGGAUAUAACUAAAUGGGACACGAAUCUGGUCGGGUUCAAGGACCGUGGAAAGCAUUAAGCCAAUUUUGGAAA
..((..((((.......((((......(((((((((........)))))))))........))))..((((((....)))))).....)))).....))......(((....)))... ( -29.54)
>DroSec_CAF1 16843 118 - 1
CGGCGAACGGAAAGGAAGUCCAGAAAAUAUAUUCACGAAAAUCGGUGGAUAUAACUAAAUGGAACACGAAUCUGGUCGGGUUCAAGGACCGUGGAAAUCAUUAAGACAGGUUUAGAAA
(.((((.((((..(....((((.....(((((((((........)))))))))......))))...)...)))).)).((((....)))))).)(((((.........)))))..... ( -25.40)
>DroSim_CAF1 7708 118 - 1
CGGCGAACGGAAAGGAAGUCCAGAAAAUAUAUUCACGAAAAUCGGUGGAUAUAACUAAAUGGAACACGAAUCUGGUCGGGUUCAAGGACCGUGGAAAUCAUUAAGACAAGCUUAGAAA
.(((...((((..(....((((.....(((((((((........)))))))))......))))...)...))))(((.((((....))))(((.....)))...)))..)))...... ( -26.80)
>DroEre_CAF1 7671 118 - 1
CGCCGAACGGAAAGAAAAUCCAGAAAAUAUAUUCACGAAAAUCGGUGGAUGUAACUAAUUGGGACACGAAUCUGGUCGGGUUCAAAGACCGUGGAAAUCUUGAAAUCAGUUUUAAGGC
..((..((((........(((((....(((((((((........))))))))).....)))))....((((((....)))))).....))))))...((((((((....)))))))). ( -27.70)
>DroYak_CAF1 7334 114 - 1
CGCCGAACGGAAAGAAAGUCCAGAAAAUAUAUUCACGAAAAUCGGUGGAUAUAACUAAUUAGGACU----UCUGGUUGGGUUCAAGGACCGUGGGAAUCACUAAACCAUUUUAAUGAA
..((....))..((((.((((.((...(((((((((........))))))))).....)).)))))----)))((((.((((....))))(((.....)))..))))........... ( -26.50)
>consensus
CGGCGAACGGAAAGGAAGUCCAGAAAAUAUAUUCACGAAAAUCGGUGGAUAUAACUAAAUGGGACACGAAUCUGGUCGGGUUCAAGGACCGUGGAAAUCAUUAAGACAAUUUUAGAAA
...(((.((((.......((((.....(((((((((........)))))))))......)))).......)))).)))((((....))))............................ (-22.38 = -22.02 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:22 2006