Locus 7695

Sequence ID	3R_DroMel_CAF1
Location	20,658,669 – 20,658,784
Length	115
Max. P	0.616386

overview

Window 6

Location	20,658,669 – 20,658,784
Length	115
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	83.70
Mean single sequence MFE	-22.55
Consensus MFE	-15.48
Energy contribution	-15.97
Covariance contribution	0.50
Combinations/Pair	1.14
Mean z-score	-1.64
Structure conservation index	0.69
SVM decision value	0.17
SVM RNA-class probability	0.616386
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20658669 115 - 27905053
CAAUAACUGCAAAAAUGGUCGCCGCUUCAGACAAAAGCAUUCUAAAUGCAUAUGAACUAAAGGAUCGUAAAAUAUCUUUUAUGAGGCUAUUAACUGGGAAACCUAACCAGAAACU
...............((((....((((((.......((((.....))))........((((((((........))))))))))))))........((....))..))))...... ( -23.00)
>DroSec_CAF1 15091 99 - 1
CAA------------UGGUCGCCCC-UCGGACAAAAGCUUUCUAAAUGCAUAUGAACUAAAGGAUCGUAAAAUAUCUUUUAUGAGGCUAUUAACUGGGCUACCUAACCACCA---
...------------.(((.((((.-..........((.........))...........((..((((((((....))))))))..)).......)))).))).........--- ( -18.70)
>DroSim_CAF1 5953 100 - 1
CAA------------UGGUCGCCCCUUCGGACAAAAGCUUUCUAAAAGCAUAUGAACUAAAGGAUCGUAAAAUAUCUUUUAUGAGGCUAUUAACUGGGCUACUUAACCACCA---
...------------.(((.(((((....).....((((((.((((((.((((..((.........))...)))))))))).)))))).......)))).))).........--- ( -20.90)
>DroEre_CAF1 5855 115 - 1
CGAUAACUGCAAAAAUGGUAGCCCCUUCAGACAAAAGCUUUCUAAAUUCAUAUGAACUAAAGGAUCGUAAAAUAUCUUUUAUGAGGCUAUUAACUGGGCUACCUAGCCAGUUGCU
...((((((.......((((((((....((..((.((((((.....(((....))).((((((((........)))))))).)))))).))..))))))))))....)))))).. ( -27.60)
>consensus
CAA____________UGGUCGCCCCUUCAGACAAAAGCUUUCUAAAUGCAUAUGAACUAAAGGAUCGUAAAAUAUCUUUUAUGAGGCUAUUAACUGGGCUACCUAACCACCA___
...............((((.(((((((.((.((...((((.....))))...))..)).)))).((((((((....)))))))))))........((....))..))))...... (-15.48 = -15.97 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:21 2006