Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 20,658,311 – 20,658,430 |
Length | 119 |
Max. P | 0.769345 |
Location | 20,658,311 – 20,658,430 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.64 |
Mean single sequence MFE | -30.12 |
Consensus MFE | -25.36 |
Energy contribution | -26.36 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.49 |
Structure conservation index | 0.84 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.769345 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20658311 119 + 27905053 GCCUGCAUUGAUUUUU-UUCGCGCAGAAGUAGGUACUCCAUUCCGGCGUUUUUCGGGUUUUUAUGGUCACCUCUAGAACUUUCACUUUUUGAUGUGCGUAAAUUUGCAUAUUUGUCGGAC ..((((..(((.....-.))).)))).....((....))..(((((((((((..((((..........))))..)))))...........((((((((......)))))))).)))))). ( -29.00) >DroSec_CAF1 14750 118 + 1 GCCUGCAUUGAUUU-U-UUCGCUCAGGAGUUGGUACUCCAUUCCGGCGUUUUUGGGGUUUUUAUGGUCACCUCUAGAACUUUCACUUUUUGAUGUGCGUAAAUUUGCAUAUUUGUCGGUC ..............-.-........(((((....)))))...((((((((((.(((((..........))))).)))))...........((((((((......)))))))).))))).. ( -29.90) >DroSim_CAF1 5612 118 + 1 GCCUGCAUUGAUUU-U-UUCGCUCAGGAGUAGGUACUCCAUUCCGGCGUUUUUGGGGUUUUUAUGGUCACCUCUAGAACUUUCACUUUUUGAUGUGCGUAAAUUUGCAUAUUUGUCGGUC ((((((.((((...-.-.....))))..))))))........((((((((((.(((((..........))))).)))))...........((((((((......)))))))).))))).. ( -31.60) >DroEre_CAF1 5516 118 + 1 GCCUGCAUUGAUUUUU-UUUCCGCAGGAGUAGGUACUCCAUUCCGGCGUUUUCGGGUU-UUUAUGGUCACCUCUAGAACUUUCACUUUUUGAUGUGCGUAAAUUUGCAUAUUUGUCGGAC .(((((...((.....-..)).)))))....((....))..(((((((((((.((((.-.........))).).)))))...........((((((((......)))))))).)))))). ( -28.80) >DroYak_CAF1 5190 120 + 1 GCCUGCAUUGAUUUUUUUUUGCGCUGGAGUAGGUACUCCAUUCCGGCGUUUUCGGGUUUUUUAUGGUCACCUCUAGAACUUUCACUUUUUGAUGUGCGUAAAUUUGCAUAUUUGUCGGAC .((.(((.(((.........((((((((((.((....))))))))))))....(((((((....((...))...))))))))))......((((((((......))))))))))).)).. ( -31.30) >consensus GCCUGCAUUGAUUUUU_UUCGCGCAGGAGUAGGUACUCCAUUCCGGCGUUUUUGGGGUUUUUAUGGUCACCUCUAGAACUUUCACUUUUUGAUGUGCGUAAAUUUGCAUAUUUGUCGGAC ((((((.(((.............)))..))))))........((((((((((.(((((..........))))).)))))...........((((((((......)))))))).))))).. (-25.36 = -26.36 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:20 2006