Locus 7692

Sequence ID 3R_DroMel_CAF1
Location 20,655,935 – 20,656,037
Length 102
Max. P 0.947684
window12410

overview

Window 0

Location 20,655,935 – 20,656,037
Length 102
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 79.51
Mean single sequence MFE -28.52
Consensus MFE -20.16
Energy contribution -20.52
Covariance contribution 0.36
Combinations/Pair 1.12
Mean z-score -2.13
Structure conservation index 0.71
SVM decision value 1.37
SVM RNA-class probability 0.947684
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20655935 102 - 27905053
---AAUGUUUA----GAAAAACAUUUGUUUAUGUUUACUG-GGCUUCAAUCAGCUGUUAUUAGUUAACAGUGCGGCAACAGCGCUGUACACUUUGCUAGAGCUGCCU----------AGA
---........----...((((((......)))))).(((-(((.....((((((((((.....)))))(((((((......))))))).....))).))...))))----------)). ( -30.20)
>DroSec_CAF1 12424 109 - 1
UUUAAUGUUUUUCUCUUCAAACAUUUGUUUAUGUUUACUG-GGCUUCAAUCAGCUGUUAUUUGUUAACAGUGCGGUAACAGCGCUGUACACUUUGCUGGAGCUGCCU----------AGA
..................((((((......)))))).(((-(((.....((((((((((.....)))))(((((((......))))))).....)))))....))))----------)). ( -30.30)
>DroSim_CAF1 3282 109 - 1
UUUAAUGUUUUUCUCUUCAAACAUUUGUUUAUGUUUACUG-GGCUUCAAUCAGCUGUUAUUAGUUAACAGUGCGGUAACAGCGCUGUAUACUUUGCUGGAGCUGCCU----------AGA
..................((((((......)))))).(((-(((.....(((((.......(((..(((((((.......)))))))..)))..)))))....))))----------)). ( -30.00)
>DroEre_CAF1 3322 102 - 1
CUUAAUGUUUGUCUCUCUUAACAUUUGUUUAUGUUUAC------UGCAAUCAGCUGUCAUUUGUUAACAGUGCAGUGACAGUGCUGCCCACA-UGCUGGAGCUGCCGG-----------A
.....((.((((.......(((((......)))))...------.)))).))(((((((((.((.......)))))))))))((.(((((..-...))).)).))...-----------. ( -22.40)
>DroYak_CAF1 3292 120 - 1
UUUAAUGUACUUCUGUCUUAACAUUUGUUUAUGUUUACUCAGACUUCAAUCAGCUGUUAUUAGUUAACAGUUCAGUAACAGUGCUGUAAACUUUGCUGGGGCUGCCGGUGCAUCAUAUGA
....(((((((((((....(((((......)))))....))))........((((((((.....))))))))((((..(((((..(....)..)))))..))))..)))))))....... ( -29.70)
>consensus
UUUAAUGUUUUUCUCUCCAAACAUUUGUUUAUGUUUACUG_GGCUUCAAUCAGCUGUUAUUAGUUAACAGUGCGGUAACAGCGCUGUACACUUUGCUGGAGCUGCCU__________AGA
..................((((((......))))))................(((((((.....)))))))(((((..(((((..(....)..)))))..)))))............... (-20.16 = -20.52 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:10 2006