| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,643,637 – 20,643,751 |
| Length | 114 |
| Max. P | 0.551130 |
| Location | 20,643,637 – 20,643,751 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 81.64 |
| Mean single sequence MFE | -31.02 |
| Consensus MFE | -21.32 |
| Energy contribution | -20.43 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.551130 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20643637 114 - 27905053 AUCAUCUUGCUGUUCCACCUUCACCUCCUCCUCAUUGGCAUCGAUGGGCUCUUCCUUGAUCACCACCUCCGACUGGAGAUCUUUCAUGGGCAUGGCAAACGGCUUCUUGGCCUU ......(((((((((((.............(((((((....))))))).........((((.(((........))).)))).....)))).)))))))..((((....)))).. ( -28.10) >DroSec_CAF1 11418 114 - 1 AUCAUCUUGCUGUUCCACCUCCACCUCCUCCUGAUCAGCAUCGAUUGGCUCUUCCUUGAUCACCACCUCCGACUGGAGAUCCUUCAUGGGCAUGGCAAACGGCUUCUUGGCCUU ......(((((((((((.............(..(((......)))..).........((((.(((........))).)))).....)))).)))))))..((((....)))).. ( -25.70) >DroSim_CAF1 11428 108 - 1 AUCAUCUUGCUGUUCCAC------CUCCUCCUGAUCGGCAUCGAUUGGCUCUUCCUUGAUCACCACCUCCGACUGGAGAUCCUUCAUGGGCAUGGCAAACGGCUUCUUGGCCUU ......(((((((((((.------......(..((((....))))..).........((((.(((........))).)))).....)))).)))))))..((((....)))).. ( -27.60) >DroEre_CAF1 11959 105 - 1 AUCAUCUUGCUGUUCCAC------CU---GCUCAUCGGCAUCGAUGGGCUCCUCCUUGAUCAUCACCACCGACUGGGGAUCCUUCAUGGGCAUGGCGAUCGGCUUCUUGCCCUU ......(((((((((((.------..---((((((((....))))))))........((((....(((.....))).)))).....)))).)))))))..(((.....)))... ( -31.20) >DroYak_CAF1 11086 108 - 1 AUCAUCAUGCUGCUCCAC------CUCCUCCUCAUCGGCAUCGAUGGGCUCCUCCUUGAUCAUCACCUCCGACUGGGGAUCCUUCAUGGGCAUGGCGAUCGGCUUCUUGGCCUU (((..(((((........------....((((((((((....((((..(........)..))))....)))).)))))).((.....)))))))..))).((((....)))).. ( -33.20) >DroAna_CAF1 10724 111 - 1 GUCAUCCCCCUGCUGAGUGUG---CUCCUCCUCCUCGACGUCGAGGGGCUCCUCCUUGAUCUUAAUGUCGGCCAGAGGCUCCUUCAUGGGCAUUGGGAGGGGCUUCUUGCCUCU (.(((.........(((.(.(---((((((..(......)..))))))).))))..........))).)(((.((((((((((((..........)))))))))))).)))... ( -40.31) >consensus AUCAUCUUGCUGUUCCAC______CUCCUCCUCAUCGGCAUCGAUGGGCUCCUCCUUGAUCACCACCUCCGACUGGAGAUCCUUCAUGGGCAUGGCAAACGGCUUCUUGGCCUU .......((((....................((((((....))))))((((......((((.(((........))).))))......))))..))))...((((....)))).. (-21.32 = -20.43 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:08 2006