Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 20,640,456 – 20,640,571 |
Length | 115 |
Max. P | 0.500000 |
Location | 20,640,456 – 20,640,571 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 77.57 |
Mean single sequence MFE | -45.94 |
Consensus MFE | -26.01 |
Energy contribution | -26.02 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.40 |
Mean z-score | -1.53 |
Structure conservation index | 0.57 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20640456 115 + 27905053 UGUGGUCUUUAAUCCUGACGCAAUUAUCGAAAAACCGCGCAGGCAACGCGGCGACAAAAACACUGAAGGUUGCUGCGGUGGCGCUGCGAUGGCGGCGCUGGAAGCCGAAGUCCAG ..(((.((((.....((.(((...............)))))(((..(((((((((.............)))))))))..((((((((....))))))))....))))))).))). ( -43.78) >DroPse_CAF1 9021 115 + 1 UGUAGUCUUCAAUCCGGAUGCCAUCAUCGAGUCGCCUCGAAAACGCCGAGGGGCCAAACCCGCAGAAGGCUGCUGUGGUGGCGCGGCGAUGGCGGCGCUCGAGGCGGAGGUGGCA ....((((.......))))((((((......(((((((((...(((((.(((......)))((((....))))..)))))((((.((....)).))))))))))))).)))))). ( -53.20) >DroGri_CAF1 8974 112 + 1 UGUGGUCUUCAAUCCCGAUGCAGUUAUUCAAGCACCACGCAAACGACAAGGUGAUAAGUCUAC---AGGUUGUUGUGGUGGGGCAGCGAUGGCUGCUCUGGAGGCCGAGUUGGAU ..(((((((((.....................(((((((...(((((...((((....)).))---..))))))))))))(((((((....))))))))))))))))........ ( -39.30) >DroEre_CAF1 8974 115 + 1 UGUGGUUUUCAAUCCUGAUGCAAUCAUCGAAAAACCGCGCAGGCAACGCGGCGACAAAAACACUGAAGGUUGCUGCGGUGGCGCUGCGAUGGCAGCCCUUGAAGCCGAGGUCCAG .((((((((...((..((((....))))))))))))))((((((..(((((((((.............)))))))))...)).))))..(((....(((((....))))).))). ( -41.02) >DroYak_CAF1 8085 115 + 1 UGUGGUCUUCAAUCCUGAUGCGAUCAUCGAAAAACCGCGCAGGCAACGCGGCGACAAAAACACUGAAGGUUGCUGCGGUGGCGCUGCGAUGGCGGCCCUCGAAGCCGAGGUCCAG .((((((.(((....)))...)))))).......((((((((((..(((((((((.............)))))))))...)).))))).))).((.(((((....))))).)).. ( -45.62) >DroPer_CAF1 9234 115 + 1 UGUAGUCUUCAAUCCGGAUGCCAUCAUCGAGUCGCCUCGAAAACGCCGUGGGGCCAAACCCACAGAAGGCUGCUGUGGUGGCGCGGCGAUGGCGGCGCUCGAGGCGGAGGUGGCA ....((((.......))))((((((......(((((((((...(((((((((......))))).....(((((((((....))))))...))))))).))))))))).)))))). ( -52.70) >consensus UGUGGUCUUCAAUCCUGAUGCAAUCAUCGAAAAACCGCGCAAACAACGCGGCGACAAAAACACUGAAGGUUGCUGCGGUGGCGCUGCGAUGGCGGCGCUCGAAGCCGAGGUCCAG .(((((((((......((((....))))......(((((.......))))).............)))))))))..((((((((((((....))))))))....))))........ (-26.01 = -26.02 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:03 2006