| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,619,222 – 20,619,312 |
| Length | 90 |
| Max. P | 0.570575 |
| Location | 20,619,222 – 20,619,312 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 81.58 |
| Mean single sequence MFE | -26.12 |
| Consensus MFE | -19.11 |
| Energy contribution | -19.33 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570575 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20619222 90 - 27905053 UGCAUCCGGAAUUGACAGUGGACGUGGACGAGGACGCUUACCAUUGUACCUUGCGUUCAAGUAACCCUCGGUGGAAGUGUCCAGUCCGAA .((.((((..........)))).))((((..((((((((.((((((....((((......))))....)))))))))))))).))))... ( -32.30) >DroVir_CAF1 4171 76 - 1 UGCAUCCAG--------------GCGGACGUGGACGCUUACCAUUGUACCUUGCGUUCAAGUAACCCUCCGUGGAAGUGUCCAGCCCAAA .((......--------------))((.(.(((((((((.((((.(....((((......))))....).)))))))))))))).))... ( -24.40) >DroGri_CAF1 4667 76 - 1 UGCAUCCGG--------------GCGGACGUGGACGCUUACCAUUGUACCUUGCGUUCAAGUAACCCUCCGUGGAUGUGUCCAGUCCAAA .((......--------------))((((.(((((((...((((.(....((((......))))....).))))..)))))))))))... ( -26.20) >DroWil_CAF1 6386 78 - 1 ---AUAAGG-----ACUG----UAUGGAUUUGGACGCUUACCAUUGUACCUUGCGUUCAAGUAACCCUCCGUGGAUGUGUCCAGGCCAAA ---......-----....----..(((.(((((((((...((((.(....((((......))))....).))))..)))))))))))).. ( -22.70) >DroMoj_CAF1 4310 76 - 1 UGUAUCCGG--------------GUGGCCGAGGACGCUUACCAUUGUACCUUGCGUUCAAGUAACCCUCUGUGGAUGUGUCCAGGCCGAA .........--------------.(((((..((((((...((((.(....((((......))))....).))))..)))))).))))).. ( -25.70) >DroAna_CAF1 4754 90 - 1 UGCAUCCGGCCAUGACAGUGGACGUGGAAGAGGACGCUUACCAUUGUACCUUGCGUUCAAGUAACCCUCCGUGGAUGUGUCCAGUCCGAA ......((.((((....)))).))((((...((((((...((((.(....((((......))))....).))))..))))))..)))).. ( -25.40) >consensus UGCAUCCGG______________GUGGACGAGGACGCUUACCAUUGUACCUUGCGUUCAAGUAACCCUCCGUGGAUGUGUCCAGUCCAAA .........................((((..((((((...((((.(....((((......))))....).))))..)))))).))))... (-19.11 = -19.33 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:02 2006